Metamenu

Effective results for Gloeobacter violaceus PCC 7421 (eggnog40)

Summary

Number of putative secreted proteins: 338
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 124 eukaryotic-like domains, contained in 338 proteins (155 high, 183 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
251221.gll4251PF13517 PF13964 (PF07250)ER
251221.gll3375(PF01344) PF13964ER
251221.gll3169(PF01344) PF13964ER
251221.gll0714PF13517 PF01833ER
251221.gll0642PF13517 PF01833(mitochondrial)
251221.glr2078(PF06739) PF01833(ER); (mitochondrial)
251221.glr0892PF13517 (PF01839) PF01833(ER)
251221.gll4248PF13517 (PF06739)mitochondrial
251221.glr4112PF13517 (PF01839)ER
251221.glr0592PF13517 PF01833(mitochondrial)
251221.gvip417(PF16639) (PF01333)ER
251221.gll4321(PF13646)ER; (ER)
251221.glr3763(PF12046)ER
251221.glr3567(PF13431)(ER)
251221.gll4216PF13517mitochondrial
251221.gll4088(PF13431)(mitochondrial)
251221.gll2996PF13517mitochondrial; (plastid)
251221.gll2991(PF09423)ER
251221.glr1754PF04278ER; (ER)
251221.gll3007(PF02985) (PF13646) (PF03130)
251221.glr2044PF11460ER
251221.gll0213PF01833ER
251221.glr2302PF13517ER
251221.gll0460PF01833ER
251221.gll2535(PF00805)ER
251221.glr1970(PF00079)(ER)
251221.gsl1083(PF08041)ER
251221.gll0490(PF09423)(mitochondrial)
251221.glr1347PF13517(ER); plastid
251221.glr4197(PF02931)mitochondrial; (mitochondrial)
251221.gvip286(PF00101)(mitochondrial)
251221.glr0438PF06206(ER)
251221.gll1515(PF07466)(ER); (mitochondrial)
251221.gll3955(PF00805)ER
251221.gll0641PF13517 PF01833(plastid)
251221.gll3126PF01833mitochondrial; (mitochondrial)
251221.glr2862(PF04423)(ER)
251221.glr1753PF04278ER
251221.gvip499(PF01716)ER
251221.gll2892(PF00805)(mitochondrial)
251221.glr2261PF13517ER
251221.gll3629PF13517ER
251221.gll3627PF13517ER
251221.gvip391(PF06514)(ER)
251221.glr3613PF04278ER
251221.glr3297(PF16166)(ER)
251221.gll3628PF13517ER
251221.glr0738(PF09990)(ER)
251221.gll2701(PF01436)ER; (ER)
251221.gvip234(PF00124)mitochondrial
251221.gll1905(PF01436)ER
251221.glr1701PF05685(mitochondrial)
251221.gll1344PF03080ER
251221.gll0601(PF01786)ER
251221.gll0994PF13517 (PF01839)(plastid)
251221.gll0995PF13517mitochondrial; (mitochondrial)
251221.glr1395(PF12049)ER
251221.glr0445(PF12849)ER
251221.glr3481(PF13355)(ER)
251221.gll1742(PF11016)ER
251221.glr1876(PF10693)(ER)
251221.glr0673(PF00805)ER
251221.gvip201(PF01789)mitochondrial; (mitochondrial)
251221.gvip379(PF02507)ER
251221.gsr3242PF11460ER
251221.gvip412(PF00737)(mitochondrial)
251221.glr3136PF05685(mitochondrial); (plastid)
251221.gll0794(PF01436)ER
251221.gll4313(PF11152)ER
251221.gll2834(PF03306)(ER)
251221.glr3825(PF09423)(ER)
251221.glr3033PF05685(mitochondrial)
251221.gll0557(PF11805)ER
251221.gll0953PF13517ER
251221.gvip143(PF03912)(mitochondrial)
251221.glr1198(PF09423)mitochondrial; (mitochondrial)
251221.glr4120PF13517mitochondrial
251221.glr2978(PF13646)(ER); ER
251221.gvip540(PF04481)mitochondrial
251221.glr0008(PF12849)mitochondrial
251221.gll3769(PF12617)ER
251221.glr3200PF05685(mitochondrial)
251221.gll0047PF13517ER
251221.gll4200(PF06739)ER
251221.gll0546(PF07466)mitochondrial
251221.gll1896PF05685ER; (ER)
251221.gsl4025(PF12159)ER
251221.glr2543(PF04422) (PF04432)(plastid)
251221.glr1790PF01833ER
251221.glr2547(PF11918)ER
251221.glr0012(PF12849)ER
251221.glr0016(PF12849)mitochondrial
251221.glr0015(PF12849)ER; (ER)
251221.glr0014(PF12849)ER
251221.gll2764PF13517 (PF01839)
251221.gvip185(PF13646) (PF03130)
251221.gll2989PF05685(plastid)
251221.glr1965(PF00805)(mitochondrial)
251221.gll1450PF13517plastid
251221.gll1451PF13517(ER)
251221.gvip053(PF02529)ER; not used
251221.gll0878(PF04422) (PF04432)
251221.gll2645PF01833(ER)
251221.glr0984(PF01839)(plastid)
251221.gll1277PF13517(mitochondrial)
251221.gll3632(PF12600)(ER)
251221.gvip387(PF02533)ER; not used
251221.gll3250PF05685(mitochondrial)
251221.glr0895PF13517 PF01833
251221.gll1126PF05685(ER)
251221.glr2553(PF02985) (PF13646)
251221.gvip109(PF00284) (PF00283)
251221.gll3694PF09412(mitochondrial)
251221.glr3391(PF13646)(mitochondrial)
251221.gll3326(PF09990)(mitochondrial)
251221.gvip117(PF10674)plastid
251221.gll3206(PF01344) PF13964
251221.gvip411(PF02468)ER; not used
251221.gll0363(PF09423)(plastid)
251221.gvip158(PF13646) (PF03130)
251221.glr0309PF05685
251221.glr3560(PF00805)
251221.gll4219PF05685
251221.gll3973PF05685
251221.glr2781PF05685
251221.gll2990PF05685
251221.glr2788(PF13646)
251221.glr1664(PF11360)
251221.glr0577PF05685
251221.gvip180(PF05996)
251221.gll0206(PF00805)
251221.glr0373(PF00686)
251221.glr3409PF05685
251221.gll3344(PF00686)
251221.gll3343PF05685
251221.gll0694(PF00343)
251221.glr1039(PF11833)
251221.gll2439PF13517
251221.glr1366PF05685
251221.glr1367(PF04253)
251221.glr0782(PF08855)
251221.glr1560PF05685
251221.gll3594PF05685
251221.gll4345PF16815
251221.glr2120(PF00805)
251221.gll0664(PF11317)
251221.gll1846(PF00079)
251221.gsl0285(PF12095)
251221.gvip296(PF02341)
251221.gvip297(PF00101)
251221.gvip501PF03742not used
251221.glr0517PF05685
251221.glr1576(PF12204)
251221.glr1778PF01833
251221.glr0990(PF05706)
251221.glr0998(PF00343)
251221.gvip471(PF00223)
251221.glr3089(PF14249)
251221.gll4152PF05685
251221.glr0687(PF00343)
251221.gll0909PF05685
251221.glr1010PF05685
251221.gll3118PF05685
251221.gll2410PF05685
251221.glr0165(PF05118)
251221.glr2923(PF08854)
251221.glr0500PF01833
251221.glr0505PF05685
251221.glr0695PF05685
251221.glr1740(PF11947)
251221.glr0983(PF12849)
251221.glr0341PF05685
251221.gvip465(PF02427)
251221.gll2068PF05685
251221.gvip470(PF00223)
251221.gll1513PF05685
251221.gsr3796(PF11998)
251221.glr3638PF05685
251221.glr1007PF05685
251221.glr1594PF05685
251221.glr1758(PF04455)
251221.glr2817(PF05118)
251221.gvip494(PF02532)not used
251221.gvip490(PF00862)
251221.gvip259(PF06596)not used
251221.glr4403PF05685
251221.gsl3544(PF11910)
251221.glr3845PF05685
251221.gll3255PF05685
251221.glr1100(PF05118)
251221.glr1106(PF05118)
251221.glr1104(PF05118)
251221.gll3130PF05685
251221.glr2485(PF10184)
251221.gll4029(PF00805)
251221.glr1292PF05685
251221.gll2664PF05685
251221.gll1258(PF00805)
251221.gll0387(PF01436)
251221.gll1255(PF13646)
251221.glr3502(PF00805)
251221.gll0039PF05685
251221.glr2333(PF04930)
251221.gll0726PF05685
251221.glr2470PF05685
251221.glr2673PF05685
251221.gll3249PF09353
251221.gll0822PF05685
251221.glr1116PF05685
251221.gll1939(PF03492)
251221.gsr1914(PF11347)
251221.glr0737(PF09990)
251221.glr1608PF05685
251221.glr1933(PF00805)
251221.glr1284PF05685
251221.gvip123(PF03912)
251221.gvip128(PF13646)
251221.glr4140(PF00648)
251221.glr3514PF06990
251221.glr3463PF05685
251221.gll3878(PF00343)
251221.glr2247PF13517
251221.gll1907PF05685
251221.glr1382PF05685
251221.glr1639PF10229
251221.gvip006(PF02392)
251221.gll2020(PF10063)
251221.gvip359(PF05996)
251221.gsr3513(PF11341)
251221.gll4186(PF08853)
251221.glr3497(PF09366)
251221.glr3813PF05685
251221.glr0712(PF04098)
251221.gll3077PF05685
251221.gll2616PF05685
251221.glr2347PF05685
251221.gvip104(PF06799)
251221.gll1131(PF12527)
251221.gvip219(PF13646)
251221.glr1400(PF11264)
251221.gll0350PF05685
251221.gll2034(PF12849)
251221.gll1358PF05685
251221.gll4249(PF00805)
251221.glr2626(PF00805)
251221.gsl2056(PF00504)
251221.gll4080PF05685
251221.glr3392PF05685
251221.gll2588PF05685
251221.gll2581PF05685
251221.gll3812PF05685
251221.glr3930PF05685
251221.glr0874(PF11210)
251221.glr0871PF05685
251221.glr1098PF05685
251221.gll1032PF05685
251221.gvip112(PF01788)not used
251221.gvip111PF02419not used
251221.gvip110(PF00283)not used
251221.gll3191(PF00805)
251221.gll2135(PF09366)
251221.gll3447PF13517
251221.gll0344PF05685
251221.gll1215(PF00805)
251221.gll1216(PF00805)
251221.gvip373(PF00124)
251221.gvip502(PF02531)
251221.gsl1241(PF11623)
251221.glr4291PF05685
251221.glr4294(PF00805)
251221.gll1597(PF00036)
251221.gll4091PF05685
251221.gll3207(PF01344)
251221.gsl0355PF05685
251221.gll2958PF05685
251221.glr1883PF05685
251221.gll1976(PF00805)
251221.gll3055(PF00805)
251221.glr0602PF05685
251221.gvip163PF06206
251221.gsl3135(PF10999)
251221.glr0936PF05685
251221.gvip306(PF13646)
251221.gvip307(PF02605)
251221.glr0330PF05685
251221.gll1378PF05685
251221.gvip410(PF01405)not used
251221.gsr3410PF05685
251221.gll2835(PF03306)
251221.gll1561PF05685
251221.gll3307PF05685
251221.glr1675PF05685
251221.glr1987(PF00805)
251221.gvip179(PF05996)
251221.gvip178(PF13646)
251221.glr1182PF06206
251221.glr1329PF05685
251221.glr0582PF05685
251221.glr1522(PF10664)
251221.glr1523PF05685
251221.gvip317(PF00124)
251221.gvip318(PF00124)
251221.gvip408(PF05151)not used
251221.gll1414PF05685
251221.glr2344PF05685
251221.glr2618PF05685
251221.gsl1443(PF00504)not used
251221.glr1840(PF01839)
251221.glr1060PF13517
251221.gll2575PF05685
251221.glr1208PF05685
251221.gsr1606(PF11267)
251221.gsl3115(PF10013)not used
251221.glr0136PF05685
251221.glr4121PF05685
251221.gll3496(PF08847)
251221.glr2971PF05685
251221.gvip543(PF05421)
251221.glr1537(PF00610)
251221.glr1538PF06206
251221.glr0310PF05685
251221.gll1318(PF09423)
251221.glr0317PF05685
251221.gvip436(PF00124)
251221.gll1895(PF14328)
251221.glr2794PF05685
251221.glr2792PF09353
251221.glr3975PF05685
251221.glr1059(PF01839)
251221.gvip157(PF13646)
251221.gsr0742(PF00504)
251221.glr0944(PF01947)
251221.gvip557(PF04983)
251221.gvip556(PF04983)
251221.gvip089(PF00124)
251221.gll0304PF05685
251221.gll4013PF05685
251221.gll3770(PF11909)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================