Effective results for Chelativorans sp. BNC1 (eggnog40)

Summary

Number of putative secreted proteins: 124
- Predicted by T4SEpre: 88
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 53 proteins (1 high, 52 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
266779.Meso_3886+(ER)
266779.Meso_2047+ER
266779.Meso_2918(PF01970)(ER)
266779.Meso_3060+ER
266779.Meso_2628(PF00221)mitochondrial; (mitochondrial)
266779.Meso_0415(PF01970)ER
266779.Meso_3996+ER
266779.Meso_3199+ER
266779.Meso_3049(PF01970)ER; (ER)
266779.Meso_4093(PF07648)ER
266779.Meso_1962+ER
266779.Meso_2509+ER
266779.Meso_1151+(mitochondrial); mitochondrial
266779.Meso_2588+(mitochondrial)
266779.Meso_3231+ER
266779.Meso_1415+mitochondrial; ER
266779.Meso_3167+ER
266779.Meso_2375+(mitochondrial); mitochondrial
266779.Meso_2997+(mitochondrial)
266779.Meso_3315(PF01970)ER; (ER)
266779.Meso_3290(PF01970)(ER)
266779.Meso_0699+ER
266779.Meso_1514+ER
266779.Meso_2511(PF01970)ER
266779.Meso_1296+ER
266779.Meso_0092+ER
266779.Meso_3299(PF01970)ER
266779.Meso_2390(PF00206) (PF14698)(mitochondrial)
266779.Meso_1285(PF00206)(mitochondrial)
266779.Meso_1067(PF01970)ER
266779.Meso_2892+ER
266779.Meso_2412(PF00024)ER
266779.Meso_2003+(mitochondrial)
266779.Meso_1033(PF06455)ER
266779.Meso_2629(PF00206) (PF14698)
266779.Meso_0564(PF00206) (PF14698)
266779.Meso_0965+(plastid)
266779.Meso_2927+(ER)
266779.Meso_3038(PF00206) (PF14698)
266779.Meso_2545(PF01175)(mitochondrial)
266779.Meso_3828(PF13872) (PF13871)
266779.Meso_1408+(PF01442)
266779.Meso_2366(PF00206) (PF14698)
266779.Meso_3217+(mitochondrial)
266779.Meso_1079(PF09130)(plastid)
266779.Meso_2397(PF01970)(ER)
266779.Meso_2392(PF00206) (PF14698)
266779.Meso_0535(PF13872) (PF13871)
266779.Meso_3901+(mitochondrial)
266779.Meso_1734+(mitochondrial)
266779.Meso_2293(PF07978)(mitochondrial)
266779.Meso_3404+
266779.Meso_1026+
266779.Meso_0750+
266779.Meso_3666+
266779.Meso_1935+
266779.Meso_2052(PF00206)
266779.Meso_0565+
266779.Meso_0413(PF07978)
266779.Meso_2630+
266779.Meso_2632(PF00221)
266779.Meso_2639(PF06032)
266779.Meso_2638(PF01175)
266779.Meso_3999+
266779.Meso_0963+
266779.Meso_1228+
266779.Meso_1353+
266779.Meso_1773+
266779.Meso_3684+
266779.Meso_0228+
266779.Meso_3857+
266779.Meso_3326+
266779.Meso_1784+
266779.Meso_0238+
266779.Meso_3842+
266779.Meso_2953+
266779.Meso_2959(PF07978)
266779.Meso_1373+
266779.Meso_1375(PF01755)
266779.Meso_3787+
266779.Meso_3788+
266779.Meso_1524+
266779.Meso_2548(PF06032)
266779.Meso_2540(PF00221)
266779.Meso_0210+
266779.Meso_2978(PF00221)
266779.Meso_3087+
266779.Meso_2446+
266779.Meso_3966(PF01970)
266779.Meso_2983(PF01175)
266779.Meso_2985(PF00221)
266779.Meso_0125+
266779.Meso_2188(PF13127)
266779.Meso_2743+
266779.Meso_2745+
266779.Meso_1198+
266779.Meso_1049(PF09130)
266779.Meso_2347+
266779.Meso_2341+
266779.Meso_3349+
266779.Meso_0259(PF00024)
266779.Meso_1850(PF06032)
266779.Meso_3816+
266779.Meso_2086+
266779.Meso_0622+
266779.Meso_1586+
266779.Meso_1849(PF06032)
266779.Meso_1844(PF01970)
266779.Meso_3621(PF00206)
266779.Meso_3622(PF00206)
266779.Meso_3723PF03736
266779.Meso_2664+
266779.Meso_2718+
266779.Meso_2387(PF01970)
266779.Meso_0385+
266779.Meso_2528(PF07978)
266779.Meso_0529+
266779.Meso_0833+
266779.Meso_0858+
266779.Meso_2068+
266779.Meso_1730+
266779.Meso_0355(PF00206)
266779.Meso_2114(PF01755)
266779.Meso_2116(PF01755)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.8 (18/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================