Effective results for Lactococcus lactis subsp. lactis Il1403 (eggnog40)

Summary

Number of putative secreted proteins: 87
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 87 proteins (40 high, 47 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
272623.L0436PF13276 (PF00665)(mitochondrial); (plastid)
272623.L140080(PF13518)(mitochondrial)
272623.L111003(PF06736)mitochondrial
272623.L118350(PF06736)ER
272623.L0440PF13276 (PF00665)(mitochondrial)
272623.L122924(PF03644)ER
272623.L85237(PF06736)ER
272623.L174282(PF13518)(mitochondrial)
272623.L37953(PF13518)(mitochondrial)
272623.L72684(PF03960)mitochondrial
272623.L138554(PF13518)(mitochondrial)
272623.L158193(PF03960)(mitochondrial); mitochondrial
272623.L425(PF13518)(mitochondrial)
272623.L15267(PF03959)ER
272623.L0435PF13276 (PF00665)(mitochondrial)
272623.L0434PF13276 (PF00665)(mitochondrial)
272623.L0433PF13276 (PF00665)(mitochondrial)
272623.L0432PF13276 (PF00665)(mitochondrial)
272623.L0439PF13276 (PF00665)(mitochondrial)
272623.L142704(PF06736)ER
272623.L54580PF04103ER
272623.L8702(PF06736)ER; (ER)
272623.L0472PF13276 (PF00665)
272623.L0471PF13276 (PF00665)
272623.L0470PF13276 (PF00665)
272623.L0457PF13276 (PF00665)
272623.L0459PF13276 (PF00665)
272623.L0458PF13276 (PF00665)
272623.L73853(PF03960)(mitochondrial)
272623.L28615(PF13518)(mitochondrial)
272623.L132585(PF03960)(mitochondrial)
272623.L862989(PF03960)(mitochondrial)
272623.L0438PF13276 (PF00665)
272623.L102972(PF06736)(mitochondrial)
272623.L0468PF13276 (PF00665)
272623.L0469PF13276 (PF00665)
272623.L0460PF13276 (PF00665)
272623.L0461PF13276 (PF00665)
272623.L0462PF13276 (PF00665)
272623.L0463PF13276 (PF00665)
272623.L0464PF13276 (PF00665)
272623.L0465PF13276 (PF00665)
272623.L0466PF13276 (PF00665)
272623.L0467PF13276 (PF00665)
272623.L131352(PF01527)
272623.L173048(PF01527)
272623.L21385(PF01527)
272623.L196017(PF03960)
272623.L54760(PF01527)
272623.L0446PF13936
272623.L0447PF13936
272623.L0444PF13936
272623.L0445PF13936
272623.L0443PF13936
272623.L0448PF13936
272623.L91907(PF01527)
272623.L0453PF13936
272623.L0452PF13936
272623.L0455PF13936
272623.L0454PF13936
272623.L0456PF13936
272623.L93886(PF01527)
272623.L0451PF13936
272623.L0450PF13936
272623.L169709(PF13151)
272623.L186703(PF01527)
272623.L76013(PF01527)
272623.L0322(PF03306)
272623.L0321(PF03306)
272623.L200067(PF05495)
272623.L0007(PF00113)
272623.L0008(PF00113)
272623.L87010(PF01527)
272623.L36774(PF01527)
272623.L155471(PF01527)
272623.L145757(PF03960)
272623.L137335(PF01527)
272623.L140905(PF01527)
272623.L200025(PF00113)not used
272623.L199247(PF01527)
272623.L00457PF13936
272623.L0449PF13936
272623.L129005(PF01527)
272623.L16826(PF01527)
272623.L27434(PF01527)
272623.L49824(PF04098)
272623.L38510(PF01527)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================