Effective results for Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (eggnog40)

Summary

Number of putative secreted proteins: 388
- Predicted by T4SEpre: 520
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 41 proteins (6 high, 35 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
272624.lpg0276+(PF00617)(mitochondrial)
272624.lpg0257+ER
272624.lpg0041+ER
272624.lpg2686+ER
272624.lpg2206+ER
272624.lpg1017(PF13246)ER
272624.lpg0301PF11901ER
272624.lpg1905PF01150ER
272624.lpg0696+mitochondrial; (mitochondrial)
272624.lpg1273+(mitochondrial)
272624.lpg1868+mitochondrial
272624.lpg2351+ER; (ER)
272624.lpg0403+ER
272624.lpg1264(PF00854)(ER)
272624.lpg1071(PF01610)ER; (ER)
272624.lpg1108+mitochondrial
272624.lpg0181+(mitochondrial)
272624.lpg0721+ER
272624.lpg2344+mitochondrial; (mitochondrial)
272624.lpg2588+ER
272624.lpg1299+ER
272624.lpg0081+mitochondrial
272624.lpg0407+ER
272624.lpg0401+(mitochondrial); (plastid)
272624.lpg0402+ER
272624.lpg1667+ER
272624.lpg1666+mitochondrial
272624.lpg1660+(mitochondrial)
272624.lpg2804+(mitochondrial)
272624.lpg2577+mitochondrial
272624.lpg1289+ER
272624.lpg2628+ER
272624.lpg2623+ER
272624.lpg0234+mitochondrial
272624.lpg1945(PF02112)ER
272624.lpg0708+ER
272624.lpg2819(PF14566)ER
272624.lpg1726+ER
272624.lpg2176+ER
272624.lpg2148+mitochondrial; (mitochondrial)
272624.lpg0896+ER
272624.lpg0558(PF01610)ER
272624.lpg2954(PF08123)ER
272624.lpg1962+ER
272624.lpg0170+(mitochondrial)
272624.lpg0172+(mitochondrial)
272624.lpg0955+ER
272624.lpg1147+(mitochondrial)
272624.lpg1144+ER
272624.lpg1965+(mitochondrial)
272624.lpg2831+(mitochondrial)
272624.lpg1158+ER
272624.lpg1151+ER
272624.lpg1154+mitochondrial
272624.lpg1082+mitochondrial; (mitochondrial)
272624.lpg0286+ER
272624.lpg0285+(mitochondrial)
272624.lpg1972+mitochondrial
272624.lpg2999+ER
272624.lpg2444+ER
272624.lpg2443+ER
272624.lpg0971PF01150ER
272624.lpg2199+(mitochondrial); (plastid)
272624.lpg2815+ER
272624.lpg1366+(mitochondrial)
272624.lpg0365+(ER)
272624.lpg0796+(mitochondrial)
272624.lpg2851+mitochondrial
272624.lpg2529+(mitochondrial); mitochondrial
272624.lpg0746(PF00854)(mitochondrial)
272624.lpg2884+ER
272624.lpg0120+ER
272624.lpg1741+ER
272624.lpg0902+ER; (ER)
272624.lpg0249(PF01610)ER
272624.lpg2222+ER
272624.lpg1533(PF00854)mitochondrial; (mitochondrial)
272624.lpg0926+(ER)
272624.lpg1803+(ER)
272624.lpg2203+(ER)
272624.lpg1491+(mitochondrial)
272624.lpg0196+(ER)
272624.lpg1481+(mitochondrial)
272624.lpg1484+(plastid)
272624.lpg1642+(PF05677)
272624.lpg2805(PF00854)(ER)
272624.lpg1109+(mitochondrial)
272624.lpg2160+(ER)
272624.lpg2372+(mitochondrial)
272624.lpg1129+(plastid)
272624.lpg1950+PF01369
272624.lpg0770+(ER)
272624.lpg0171+(PF00646)
272624.lpg2826+(ER)
272624.lpg2830+(PF04564)
272624.lpg1978+(PF04488)
272624.lpg2538+(mitochondrial)
272624.lpg1718+plastid
272624.lpg2198(PF00854)(mitochondrial)
272624.lpg0294+(mitochondrial)
272624.lpg2525+(ER)
272624.lpg2526+(mitochondrial)
272624.lpg1760+plastid
272624.lpg0439+(ER)
272624.lpg2637+(plastid)
272624.lpg2885+(plastid)
272624.lpg1340+plastid
272624.lpg2874+(mitochondrial)
272624.lpg1358+(mitochondrial)
272624.lpg1684+PF07065
272624.lpg1328+(PF00314)
272624.lpg2411+
272624.lpg2410+
272624.lpg2416+
272624.lpg0675+
272624.lpg0921+
272624.lpg2239+
272624.lpg2301+
272624.lpg2300+
272624.lpg1259+
272624.lpg0260+
272624.lpg2215+
272624.lpg0046+
272624.lpg2424+
272624.lpg2425+
272624.lpg2420+
272624.lpg2421+
272624.lpg2338+
272624.lpg2118(PF01610)
272624.lpg2117(PF01610)
272624.lpg1797+
272624.lpg1798+
272624.lpg2200+
272624.lpg1242+
272624.lpg0275+
272624.lpg1907+
272624.lpg0059+
272624.lpg2434+
272624.lpg0695+
272624.lpg0693+
272624.lpg1496+
272624.lpg1654+
272624.lpg2694+
272624.lpg2692+
272624.lpg2328+
272624.lpg2322+
272624.lpg0870+
272624.lpg2745+
272624.lpg2744+
272624.lpg2216+
272624.lpg1476+
272624.lpg1312+
272624.lpg1316+
272624.lpg1005+
272624.lpg1752+
272624.lpg0191+
272624.lpg0195+
272624.lpg0208+
272624.lpg0422+
272624.lpg0515+
272624.lpg0518+
272624.lpg0519+
272624.lpg0733+
272624.lpg2910+
272624.lpg2912+
272624.lpg2504+
272624.lpg1483+
272624.lpg1489+
272624.lpg1488+
272624.lpg2359+
272624.lpg2591+
272624.lpg2771+
272624.lpg1268+
272624.lpg1266+
272624.lpg1072(PF01610)
272624.lpg2806+
272624.lpg1106+
272624.lpg1101+
272624.lpg0182+
272624.lpg0210+
272624.lpg0437+
272624.lpg0436+
272624.lpg1924+
272624.lpg1851+
272624.lpg2907+
272624.lpg1670+
272624.lpg2391+
272624.lpg2584+
272624.lpg2762+
272624.lpg2761+
272624.lpg1290+
272624.lpg1453+
272624.lpg1111+
272624.lpg1110+
272624.lpg0227+
272624.lpg1529+
272624.lpg1933+
272624.lpg0080+
272624.lpg0086+
272624.lpg0716+
272624.lpg2975+
272624.lpg0405+
272624.lpg2482+
272624.lpg1661+
272624.lpg2370+
272624.lpg2571+
272624.lpg1598+
272624.lpg2154+
272624.lpg2717+
272624.lpg2718+
272624.lpg1288+
272624.lpg1449+
272624.lpg2155+
272624.lpg2156+
272624.lpg2153+
272624.lpg1056(PF07700)
272624.lpg1053+
272624.lpg1120+
272624.lpg1121+
272624.lpg1124+
272624.lpg1947+
272624.lpg1948+
272624.lpg1949+
272624.lpg1602+
272624.lpg0096+
272624.lpg0095(PF05761)
272624.lpg0094+
272624.lpg0090+
272624.lpg0144(PF01610)
272624.lpg0143(PF01610)
272624.lpg2490+
272624.lpg2498+
272624.lpg2363(PF01610)
272624.lpg2566+
272624.lpg2173(PF01610)
272624.lpg2382+
272624.lpg0963+
272624.lpg2149+
272624.lpg2147+
272624.lpg0894(PF09265)
272624.lpg1545+
272624.lpg1137+
272624.lpg0794+
272624.lpg1953+
272624.lpg1959+
272624.lpg1958+
272624.lpg0390+
272624.lpg2828+
272624.lpg2829+
272624.lpg2552+
272624.lpg2555+
272624.lpg2556+
272624.lpg1639+
272624.lpg0953+
272624.lpg1425+
272624.lpg1426+
272624.lpg2603+
272624.lpg2936+
272624.lpg2422+
272624.lpg1551+
272624.lpg1148+
272624.lpg1145+
272624.lpg1387+
272624.lpg1669(PF14701)
272624.lpg1093(PF13246)
272624.lpg0543+
272624.lpg1890+
272624.lpg0160+
272624.lpg1964+
272624.lpg1966+
272624.lpg1960+
272624.lpg1961(PF04488)
272624.lpg1633PF14360
272624.lpg2832+
272624.lpg2546+
272624.lpg2541+
272624.lpg1701+
272624.lpg1702+
272624.lpg2720+
272624.lpg2050+
272624.lpg0945+
272624.lpg0944+
272624.lpg0940+
272624.lpg0948+
272624.lpg0030+
272624.lpg1152+
272624.lpg1083+
272624.lpg1089+
272624.lpg0284+
272624.lpg1884+
272624.lpg1881+
272624.lpg0376+
272624.lpg0375+
272624.lpg0116+
272624.lpg1976+
272624.lpg1975+
272624.lpg1621+
272624.lpg1625+
272624.lpg0621+
272624.lpg2844+
272624.lpg2539+
272624.lpg3000+
272624.lpg0021+
272624.lpg1717+
272624.lpg1716+
272624.lpg1711+
272624.lpg2283+
272624.lpg1578+
272624.lpg1164+
272624.lpg1166+
272624.lpg2813+
272624.lpg0364+
272624.lpg1183+
272624.lpg1986+
272624.lpg0103+
272624.lpg0634+
272624.lpg2528+
272624.lpg2523+
272624.lpg2527+
272624.lpg0038+
272624.lpg2298+
272624.lpg2456+
272624.lpg2451+
272624.lpg2452+
272624.lpg2459(PF07700)
272624.lpg0969+
272624.lpg0968+
272624.lpg2271+
272624.lpg1171+
272624.lpg1378(PF00854)
272624.lpg0135+
272624.lpg0130+
272624.lpg0642+
272624.lpg2862+
272624.lpg2510+
272624.lpg2511+
272624.lpg2519+
272624.lpg0008+
272624.lpg1773+
272624.lpg1774+
272624.lpg1776+
272624.lpg2461+
272624.lpg2464+
272624.lpg2144+
272624.lpg2248+
272624.lpg2241(PF12471)
272624.lpg2242(PF07958)
272624.lpg2244+
272624.lpg2888+
272624.lpg2889+
272624.lpg0967+
272624.lpg0898+
272624.lpg1836+
272624.lpg0126+
272624.lpg2465+
272624.lpg2879+
272624.lpg2505+
272624.lpg2509+
272624.lpg1888+
272624.lpg0012+
272624.lpg1588+
272624.lpg2166+
272624.lpg1692+
272624.lpg2651+
272624.lpg1969+
272624.lpg1355+
272624.lpg2691+
272624.lpg1827+
272624.lpg0483+
272624.lpg0246+
272624.lpg0240+
272624.lpg1963+
272624.lpg1751+
272624.lpg2793+
272624.lpg2409+
272624.lpg2406+
272624.lpg2407+
272624.lpg2223+
272624.lpg2224+
272624.lpg1683+
272624.lpg1685+
272624.lpg1687+
272624.lpg1689+
272624.lpg2311+
272624.lpg2433+
272624.lpg2137+
272624.lpg2131+
272624.lpg1227+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.8 (8/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================