Effective results for Novosphingobium aromaticivorans DSM 12444 (eggnog40)

Summary

Number of putative secreted proteins: 70
- Predicted by T4SEpre: 58
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 20 proteins (5 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
279238.Saro_2161+ER
279238.Saro_1621(PF03537)(mitochondrial)
279238.Saro_0025+ER
279238.Saro_0838+ER
279238.Saro_1184(PF03537)ER; (ER)
279238.Saro_1721PF11578ER
279238.Saro_0052+ER
279238.Saro_2690+ER
279238.Saro_1078+ER; (ER)
279238.Saro_0458+ER
279238.Saro_2523+(mitochondrial)
279238.Saro_1429+(mitochondrial)
279238.Saro_2829+ER
279238.Saro_1359+ER
279238.Saro_1126+ER
279238.Saro_2991+mitochondrial
279238.Saro_2057(PF13436)ER
279238.Saro_1377+ER
279238.Saro_0349(PF11074)(mitochondrial)
279238.Saro_3189+(mitochondrial)
279238.Saro_3181PF11578ER
279238.Saro_2282(PF03901)ER
279238.Saro_2289(PF06455)ER
279238.Saro_0612+ER; (ER)
279238.Saro_1748+ER; (ER)
279238.Saro_2131+mitochondrial
279238.Saro_0424+(mitochondrial); mitochondrial
279238.Saro_1955+ER
279238.Saro_0377(PF13872) (PF13871)(mitochondrial)
279238.Saro_0370+mitochondrial
279238.Saro_3298+plastid
279238.Saro_2208(PF13872) (PF13871)
279238.Saro_2543+
279238.Saro_0573(PF02933)
279238.Saro_1145+
279238.Saro_0925+
279238.Saro_2378+
279238.Saro_0724(PF04765)
279238.Saro_2888+
279238.Saro_0801PF11578
279238.Saro_2772+
279238.Saro_0128+
279238.Saro_0912+
279238.Saro_2507+
279238.Saro_2500(PF03537)
279238.Saro_1085+
279238.Saro_1292+
279238.Saro_0451+
279238.Saro_2528+
279238.Saro_2237PF11578
279238.Saro_0530(PF03537)
279238.Saro_0663+
279238.Saro_1794+
279238.Saro_0891(PF10013)not used
279238.Saro_2656+
279238.Saro_2318+
279238.Saro_0868+
279238.Saro_1135+
279238.Saro_0259(PF05706)
279238.Saro_2182+
279238.Saro_2877PF11578
279238.Saro_1576(PF01786)
279238.Saro_0180+
279238.Saro_0299+
279238.Saro_3055+
279238.Saro_0436+
279238.Saro_2596+
279238.Saro_2595+
279238.Saro_3241+
279238.Saro_1769+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.8 (8/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================