Effective results for Rickettsia akari str. Hartford (eggnog40)

Summary

Number of putative secreted proteins: 46
- Predicted by T4SEpre: 46
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 12 proteins (7 high, 5 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
293614.A1C_05810PF03219ER
293614.A1C_00790+ER
293614.A1C_01940+ER
293614.A1C_00800+ER
293614.A1C_02495+ER
293614.A1C_02490+(mitochondrial)
293614.A1C_06095+ER
293614.A1C_06695+ER
293614.A1C_02280(PF05637)ER
293614.A1C_06475(PF03959)ER
293614.A1C_06010+ER
293614.A1C_03065+ER
293614.A1C_00360+ER
293614.A1C_00260PF02326(ER)
293614.A1C_00420+ER
293614.A1C_00810+ER
293614.A1C_03730+
293614.A1C_04030+
293614.A1C_05815(PF09752)
293614.A1C_03560+
293614.A1C_02830PF03219
293614.A1C_02330+
293614.A1C_00440PF03219
293614.A1C_01580+
293614.A1C_01885+
293614.A1C_06320+
293614.A1C_05960+
293614.A1C_03575PF03219
293614.A1C_00305+
293614.A1C_03990+
293614.A1C_03650(PF09825)
293614.A1C_04650+
293614.A1C_05870+
293614.A1C_06750+
293614.A1C_02715+
293614.A1C_00185+
293614.A1C_01080+
293614.A1C_03840PF03219
293614.A1C_03190+
293614.A1C_01330+
293614.A1C_01565+
293614.A1C_02855+
293614.A1C_02585(PF14328)
293614.A1C_01675+
293614.A1C_01775+
293614.A1C_02770PF01369

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 1.6 (16/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================