Effective results for Chlorobium luteolum DSM 273 (eggnog40)

Summary

Number of putative secreted proteins: 19
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 19 proteins (1 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
319225.Plut_0367PF00354 (PF00059)(ER)
319225.Plut_1173(PF02374)(mitochondrial)
319225.Plut_0253(PF11965)ER
319225.Plut_0267(PF02374)mitochondrial
319225.Plut_0263(PF02374)(mitochondrial); mitochondrial
319225.Plut_0070(PF02374)mitochondrial; (mitochondrial)
319225.Plut_0015(PF12159) (PF10693)
319225.Plut_0457(PF02374)(mitochondrial)
319225.Plut_2003(PF09366)
319225.Plut_0736(PF04383)
319225.Plut_1176(PF14701)
319225.Plut_0255(PF11965)
319225.Plut_1027(PF06101)
319225.Plut_0787(PF11965)
319225.Plut_0849(PF04383)
319225.Plut_0074(PF09366)
319225.Plut_0697(PF02933)
319225.Plut_0696(PF02374)
319225.Plut_1061(PF16114)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================