Effective results for Nitrosospira multiformis ATCC 25196 (eggnog40)

Summary

Number of putative secreted proteins: 85
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 85 proteins (3 high, 82 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
323848.Nmul_A2021(PF13683)mitochondrial; (mitochondrial)
323848.Nmul_A0920(PF00264)mitochondrial
323848.Nmul_A0251(PF16332)(mitochondrial); (ER)
323848.Nmul_A0258(PF14099)ER
323848.Nmul_A2460(PF10042)(mitochondrial)
323848.Nmul_A1432(PF13276)(mitochondrial)
323848.Nmul_A0109(PF13683)mitochondrial; (mitochondrial)
323848.Nmul_A1295(PF13276)(mitochondrial)
323848.Nmul_A1425(PF06884)ER
323848.Nmul_A1166PF00050ER
323848.Nmul_A0545(PF13276)(mitochondrial)
323848.Nmul_A0845PF00050ER
323848.Nmul_A1009(PF00036)ER; (ER)
323848.Nmul_A2441(PF13429)ER
323848.Nmul_A0976(PF08964)ER; (ER)
323848.Nmul_A1735(PF13429)ER
323848.Nmul_A0465(PF00194)ER; (ER)
323848.Nmul_A0461(PF00194)ER
323848.Nmul_A0615(PF03098)(mitochondrial)
323848.Nmul_A2025(PF01527)(plastid)
323848.Nmul_A2024(PF13276)(mitochondrial)
323848.Nmul_A0417(PF14397)(plastid)
323848.Nmul_A1442(PF13276)(mitochondrial)
323848.Nmul_A2055(PF13276)(mitochondrial)
323848.Nmul_A2010(PF13276)(mitochondrial)
323848.Nmul_A1301(PF13276) (PF13683)
323848.Nmul_A0138(PF13276) (PF13683)
323848.Nmul_A1484(PF13276) (PF13683)
323848.Nmul_A2405(PF13276)(mitochondrial)
323848.Nmul_A2432(PF03537)plastid
323848.Nmul_A0168(PF13276)(mitochondrial)
323848.Nmul_A0169(PF01527)(plastid)
323848.Nmul_A1570(PF13276)(mitochondrial)
323848.Nmul_A2174(PF13276)(mitochondrial)
323848.Nmul_A2173(PF01527)(plastid)
323848.Nmul_A1736(PF03537)(mitochondrial)
323848.Nmul_A0054(PF01527)(plastid)
323848.Nmul_A0055(PF13276)(mitochondrial)
323848.Nmul_A2022(PF01527)
323848.Nmul_A1443(PF01527)
323848.Nmul_A1458(PF14099)
323848.Nmul_A1456(PF14099)
323848.Nmul_A1693(PF13683)
323848.Nmul_A1696(PF13683)
323848.Nmul_A1694(PF01527)
323848.Nmul_A2009(PF13683)
323848.Nmul_A2008(PF14397)
323848.Nmul_A2266(PF00862)
323848.Nmul_A0424(PF14397)
323848.Nmul_A2011(PF01527)
323848.Nmul_A1431(PF01527)
323848.Nmul_A1300(PF01527)
323848.Nmul_A2208(PF13551)
323848.Nmul_A0137(PF01527)
323848.Nmul_A0355(PF14721)
323848.Nmul_A1637(PF01527)
323848.Nmul_A1248(PF13551)
323848.Nmul_A0594(PF13683)not used
323848.Nmul_A2457(PF10042)
323848.Nmul_A2054(PF13683)
323848.Nmul_A2056(PF01527)
323848.Nmul_A1434(PF13551)
323848.Nmul_A0108(PF01527)
323848.Nmul_A1297(PF13276)
323848.Nmul_A1296(PF01527)
323848.Nmul_A0956(PF03092)
323848.Nmul_A1428(PF13551)
323848.Nmul_A2438(PF03537)
323848.Nmul_A2098(PF13551)
323848.Nmul_A2096(PF13551)
323848.Nmul_A1569(PF13683)
323848.Nmul_A0546(PF01527)
323848.Nmul_A2159PF04457
323848.Nmul_A2158(PF05189)
323848.Nmul_A2406(PF01527)
323848.Nmul_A2156(PF00264)
323848.Nmul_A1373(PF12255)
323848.Nmul_A1571(PF01527)
323848.Nmul_A0533(PF03098)
323848.Nmul_A0532(PF00305)
323848.Nmul_A0527(PF00264)
323848.Nmul_A0868(PF13436)
323848.Nmul_A1483(PF01527)
323848.Nmul_A0282(PF03031)
323848.Nmul_A1441(PF13683)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================