Effective results for Campylobacter concisus 13826 (eggnog40)

Summary

Number of putative secreted proteins: 18
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 18 proteins (3 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
360104.CCC13826_0231(PF05935)ER
360104.CCC13826_0460PF02516ER
360104.CCC13826_1706(PF00209)ER; (ER)
360104.CCC13826_0452PF02516ER
360104.CCC13826_1504(PF00209)ER; (ER)
360104.CCC13826_0901(PF05935)ER
360104.CCC13826_2200(PF02460)(ER); (mitochondrial)
360104.CCC13826_1611(PF00209)ER
360104.CCC13826_1505(PF00209)(ER)
360104.CCC13826_1503(PF00209)(ER)
360104.CCC13826_0535(PF02475)
360104.CCC13826_1075(PF02689)
360104.CCC13826_0801(PF03054)
360104.CCC13826_1047(PF15588)
360104.CCC13826_0950(PF11074)
360104.CCC13826_1016(PF03054)
360104.CCC13826_0947PF07453
360104.CCC13826_1555(PF03054)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.375 (3/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================