Effective results for Exiguobacterium sp. AT1b (eggnog40)

Summary

Number of putative secreted proteins: 27
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 27 proteins (2 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
360911.EAT1b_0683(PF06725) (PF08239)ER
360911.EAT1b_1081(PF16889)ER
360911.EAT1b_0264(PF06725)ER
360911.EAT1b_0908(PF08239)ER
360911.EAT1b_1076(PF08239)ER
360911.EAT1b_1073(PF16889)ER
360911.EAT1b_0759(PF08239)ER
360911.EAT1b_1722(PF03714)ER
360911.EAT1b_1343(PF08239)ER
360911.EAT1b_1256(PF08239)ER
360911.EAT1b_1695(PF06725)ER
360911.EAT1b_2130(PF02171)(mitochondrial)
360911.EAT1b_1021(PF03714)ER
360911.EAT1b_0376PF05705ER
360911.EAT1b_1171(PF08239)ER
360911.EAT1b_1072(PF16889)(plastid)
360911.EAT1b_2320(PF08239)(ER)
360911.EAT1b_2208(PF08239)(ER)
360911.EAT1b_1145(PF13238)
360911.EAT1b_1522(PF14328)
360911.EAT1b_0071(PF06725)
360911.EAT1b_0006PF00493
360911.EAT1b_0013(PF06725)
360911.EAT1b_0983(PF13238)
360911.EAT1b_2342(PF13238)
360911.EAT1b_0043(PF06725)
360911.EAT1b_3037(PF00847)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================