Effective results for Polaromonas naphthalenivorans CJ2 (eggnog40)

Summary

Number of putative secreted proteins: 49
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 49 proteins (0 high, 49 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
365044.Pnap_0623(PF01223)(ER)
365044.Pnap_1393(PF13551) (PF13358) (PF13592)
365044.Pnap_3724(PF13551) (PF13358) (PF13592)
365044.Pnap_3924(PF01223)mitochondrial
365044.Pnap_2676(PF08392)(mitochondrial)
365044.Pnap_1805(PF13358)(mitochondrial)
365044.Pnap_1909(PF13358)(mitochondrial)
365044.Pnap_0871(PF13551) (PF13358) (PF13592)
365044.Pnap_0418(PF13551) (PF13358) (PF13592)
365044.Pnap_1739(PF13551) (PF13358) (PF13592)
365044.Pnap_1138(PF02371)
365044.Pnap_2046(PF11074)
365044.Pnap_1637(PF02371)
365044.Pnap_2946(PF16155)
365044.Pnap_1395(PF02371)
365044.Pnap_1396(PF02371)
365044.Pnap_2997(PF13358)
365044.Pnap_1987(PF00162)
365044.Pnap_0427(PF02371)
365044.Pnap_0630(PF01223)
365044.Pnap_3108(PF02371)
365044.Pnap_2083(PF13358)
365044.Pnap_4034(PF13358)
365044.Pnap_0348(PF13358)
365044.Pnap_2472(PF02371)
365044.Pnap_1748(PF02371)
365044.Pnap_1747(PF02371)
365044.Pnap_4008(PF13358)
365044.Pnap_3874(PF00162)
365044.Pnap_1824(PF13358)
365044.Pnap_1751(PF02371)
365044.Pnap_0499(PF05189)
365044.Pnap_1806(PF13592)
365044.Pnap_1240(PF13358)
365044.Pnap_2690(PF17186)
365044.Pnap_1910(PF13592)
365044.Pnap_0426(PF02371)
365044.Pnap_0420(PF02371)
365044.Pnap_3636(PF13358)
365044.Pnap_1458(PF17186)
365044.Pnap_2165(PF09130)
365044.Pnap_2901(PF13358)
365044.Pnap_2373(PF02201)
365044.Pnap_2574(PF13592)
365044.Pnap_2575(PF13358)
365044.Pnap_0410(PF13358)
365044.Pnap_3963(PF02201)
365044.Pnap_0141(PF13358)
365044.Pnap_0601(PF09130)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================