Effective results for Caulobacter sp. K31 (eggnog40)
Summary
Number of putative secreted proteins: 260
- Predicted by T4SEpre: 85
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 190 proteins (1 high, 189 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 366602.Caul_0143 | + | (PF00593) | mitochondrial | ||
| 366602.Caul_1694 | + | (PF00135) | ER | ||
| 366602.Caul_2355 | + | (PF00593) | (ER); ER | ||
| 366602.Caul_1136 | + | (PF00593) | ER | ||
| 366602.Caul_0780 | + | (mitochondrial) | |||
| 366602.Caul_3941 | (PF00593) | (mitochondrial) | |||
| 366602.Caul_0563 | (PF00593) | (mitochondrial) | |||
| 366602.Caul_1967 | (PF00593) | ER | |||
| 366602.Caul_1360 | (PF00593) | ER | |||
| 366602.Caul_2543 | (PF00593) | (ER) | |||
| 366602.Caul_2142 | (PF00593) | ER | |||
| 366602.Caul_3230 | (PF00036) | ER | |||
| 366602.Caul_4016 | (PF00593) | ER | |||
| 366602.Caul_4013 | (PF00135) | ER | |||
| 366602.Caul_0979 | (PF09351) | (ER); ER | |||
| 366602.Caul_0805 | + | ER | |||
| 366602.Caul_0484 | (PF00593) | ER | |||
| 366602.Caul_2132 | (PF00135) | ER | |||
| 366602.Caul_2647 | (PF00593) | (ER) | |||
| 366602.Caul_2646 | (PF00593) | ER | |||
| 366602.Caul_2642 | + | ER | |||
| 366602.Caul_3593 | + | (mitochondrial); plastid | |||
| 366602.Caul_4266 | + | ER | |||
| 366602.Caul_3922 | (PF00593) | mitochondrial; ER | |||
| 366602.Caul_0346 | (PF00593) | ER | |||
| 366602.Caul_1988 | (PF00593) | ER | |||
| 366602.Caul_1435 | + | ER | |||
| 366602.Caul_2185 | (PF09351) | ER | |||
| 366602.Caul_2181 | (PF01541) | ER; (ER) | |||
| 366602.Caul_3696 | (PF06764) | ER | |||
| 366602.Caul_4674 | (PF00593) | ER | |||
| 366602.Caul_2859 | (PF00593) | ER | |||
| 366602.Caul_4100 | (PF00593) | ER | |||
| 366602.Caul_0591 | (PF00593) | ER | |||
| 366602.Caul_1532 | + | ER | |||
| 366602.Caul_2995 | (PF00593) | (mitochondrial) | |||
| 366602.Caul_2996 | (PF16670) | ER | |||
| 366602.Caul_4061 | (PF01963) | ER | |||
| 366602.Caul_4060 | (PF01963) | ER | |||
| 366602.Caul_3715 | (PF00593) | (ER); ER | |||
| 366602.Caul_4599 | (PF00135) | ER | |||
| 366602.Caul_0292 | (PF00593) | (ER) | |||
| 366602.Caul_1255 | + | ER | |||
| 366602.Caul_2509 | (PF00593) | ER | |||
| 366602.Caul_3422 | + | ER | |||
| 366602.Caul_1889 | (PF00593) | ER | |||
| 366602.Caul_0288 | (PF00593) | (mitochondrial) | |||
| 366602.Caul_1080 | (PF00593) | ER | |||
| 366602.Caul_3285 | + | ER | |||
| 366602.Caul_3243 | (PF00593) | mitochondrial | |||
| 366602.Caul_4602 | (PF00593) | mitochondrial | |||
| 366602.Caul_2863 | (PF00135) | ER | |||
| 366602.Caul_2866 | (PF00050) | ER | |||
| 366602.Caul_0123 | (PF00593) | ER | |||
| 366602.Caul_4129 | + | ER | |||
| 366602.Caul_3646 | + | (mitochondrial); (plastid) | |||
| 366602.Caul_1474 | (PF00593) | ER | |||
| 366602.Caul_2073 | (PF00593) | mitochondrial | |||
| 366602.Caul_2677 | (PF00593) | ER | |||
| 366602.Caul_2497 | + | ER | |||
| 366602.Caul_2383 | (PF00593) | ER; (ER) | |||
| 366602.Caul_3252 | (PF00593) | ER | |||
| 366602.Caul_3413 | + | ER | |||
| 366602.Caul_4569 | + | ER | |||
| 366602.Caul_1862 | (PF00593) | ER | |||
| 366602.Caul_2571 | + | mitochondrial | |||
| 366602.Caul_4091 | (PF00593) | mitochondrial; (mitochondrial) | |||
| 366602.Caul_4098 | + | ER | |||
| 366602.Caul_1668 | (PF01963) | ER | |||
| 366602.Caul_1289 | (PF00593) | ER | |||
| 366602.Caul_4882 | (PF01963) | ER | |||
| 366602.Caul_4886 | (PF08881) | ER | |||
| 366602.Caul_2663 | (PF00593) | ER | |||
| 366602.Caul_2064 | (PF04820) | (ER); (mitochondrial) | |||
| 366602.Caul_2243 | (PF00593) | ER | |||
| 366602.Caul_3280 | (PF00593) | (ER) | |||
| 366602.Caul_3289 | (PF00593) | (ER) | |||
| 366602.Caul_0894 | + | mitochondrial; (mitochondrial) | |||
| 366602.Caul_4082 | (PF00593) | ER | |||
| 366602.Caul_0273 | + | ER | |||
| 366602.Caul_1672 | (PF00593) | (ER) | |||
| 366602.Caul_0504 | (PF00593) | ER | |||
| 366602.Caul_5007 | + | (mitochondrial); mitochondrial | |||
| 366602.Caul_2653 | + | ER | |||
| 366602.Caul_2126 | (PF00593) | ER | |||
| 366602.Caul_1111 | (PF00593) | ER; (ER) | |||
| 366602.Caul_0516 | (PF00593) | mitochondrial; ER | |||
| 366602.Caul_2137 | (PF00593) | ER | |||
| 366602.Caul_2339 | + | ER | |||
| 366602.Caul_4991 | (PF06764) | ER | |||
| 366602.Caul_2735 | (PF00593) | ER | |||
| 366602.Caul_1850 | (PF00593) | ER; mitochondrial | |||
| 366602.Caul_1859 | (PF00593) | ER | |||
| 366602.Caul_1858 | (PF16670) | ER | |||
| 366602.Caul_4194 | + | ER | |||
| 366602.Caul_0321 | (PF00593) | ER | |||
| 366602.Caul_4698 | (PF00593) | ER | |||
| 366602.Caul_4694 | (PF00593) | ER | |||
| 366602.Caul_3764 | + | ER | |||
| 366602.Caul_0069 | + | (mitochondrial); (plastid) | |||
| 366602.Caul_3883 | + | (ER); ER | |||
| 366602.Caul_2020 | (PF02265) | ER | |||
| 366602.Caul_2597 | + | ER | |||
| 366602.Caul_4751 | (PF00593) | (ER) | |||
| 366602.Caul_1838 | (PF00593) | mitochondrial; (mitochondrial) | |||
| 366602.Caul_0308 | (PF00593) | ER | |||
| 366602.Caul_1120 | (PF00593) | ER | |||
| 366602.Caul_2498 | + | mitochondrial; (mitochondrial) | |||
| 366602.Caul_3561 | (PF04820) | ER; (ER) | |||
| 366602.Caul_3415 | (PF00593) | ER | |||
| 366602.Caul_3783 | (PF00593) | ER | |||
| 366602.Caul_0044 | (PF00593) | mitochondrial | |||
| 366602.Caul_0226 | (PF00593) | ER | |||
| 366602.Caul_1970 | (PF00593) | ER | |||
| 366602.Caul_1378 | (PF00593) | ER | |||
| 366602.Caul_1528 | + | ER | |||
| 366602.Caul_4956 | + | ER | |||
| 366602.Caul_2574 | + | ER | |||
| 366602.Caul_2173 | + | ER | |||
| 366602.Caul_3310 | (PF14497) | (mitochondrial) | |||
| 366602.Caul_2406 | (PF04820) | mitochondrial; (mitochondrial) | |||
| 366602.Caul_4338 | (PF00593) | (ER) | |||
| 366602.Caul_0968 | (PF00593) | (ER) | |||
| 366602.Caul_2886 | + | (mitochondrial) | |||
| 366602.Caul_2426 | (PF00593) | (mitochondrial) | |||
| 366602.Caul_4264 | (PF01541) | (plastid) | |||
| 366602.Caul_1162 | (PF13207) | (plastid) | |||
| 366602.Caul_2180 | (PF13565) | (plastid) | |||
| 366602.Caul_2711 | (PF00593) | (mitochondrial) | |||
| 366602.Caul_3906 | (PF01541) | (mitochondrial) | |||
| 366602.Caul_1726 | + | (mitochondrial) | |||
| 366602.Caul_2063 | (PF00593) | (mitochondrial) | |||
| 366602.Caul_1908 | (PF00593) | (mitochondrial) | |||
| 366602.Caul_1840 | (PF04820) | (mitochondrial) | |||
| 366602.Caul_5006 | (PF09351) | (plastid) | |||
| 366602.Caul_2368 | (PF00593) | (mitochondrial) | |||
| 366602.Caul_4035 | (PF01532) | (mitochondrial) | |||
| 366602.Caul_4249 | (PF01527) | ||||
| 366602.Caul_0816 | + | ||||
| 366602.Caul_0567 | (PF01527) | ||||
| 366602.Caul_2548 | (PF00593) | ||||
| 366602.Caul_2149 | + | ||||
| 366602.Caul_2143 | (PF04820) | ||||
| 366602.Caul_2144 | (PF04820) | ||||
| 366602.Caul_2894 | + | ||||
| 366602.Caul_2893 | + | ||||
| 366602.Caul_3236 | (PF00135) | ||||
| 366602.Caul_4277 | (PF01541) | ||||
| 366602.Caul_3933 | (PF14497) | ||||
| 366602.Caul_0375 | (PF13565) | ||||
| 366602.Caul_0487 | (PF14330) | ||||
| 366602.Caul_4727 | + | ||||
| 366602.Caul_0572 | (PF00593) | ||||
| 366602.Caul_0779 | + | ||||
| 366602.Caul_3332 | (PF14497) | ||||
| 366602.Caul_4316 | (PF14497) | ||||
| 366602.Caul_4007 | (PF00593) | ||||
| 366602.Caul_3599 | (PF13276) | ||||
| 366602.Caul_0167 | + | ||||
| 366602.Caul_3351 | + | ||||
| 366602.Caul_0340 | (PF13276) | ||||
| 366602.Caul_0584 | (PF00135) | ||||
| 366602.Caul_1637 | + | ||||
| 366602.Caul_2184 | + | ||||
| 366602.Caul_4077 | (PF00593) | ||||
| 366602.Caul_0004 | + | ||||
| 366602.Caul_0007 | + | ||||
| 366602.Caul_0599 | + | ||||
| 366602.Caul_0596 | + | ||||
| 366602.Caul_4841 | (PF05711) | ||||
| 366602.Caul_2198 | + | ||||
| 366602.Caul_0916 | (PF01541) | ||||
| 366602.Caul_3484 | + | ||||
| 366602.Caul_0296 | (PF04820) | ||||
| 366602.Caul_0297 | (PF04820) | ||||
| 366602.Caul_2279 | (PF02265) | ||||
| 366602.Caul_3478 | + | ||||
| 366602.Caul_3477 | PF07460 | ||||
| 366602.Caul_3275 | (PF01527) | ||||
| 366602.Caul_3274 | (PF13276) | ||||
| 366602.Caul_3278 | (PF04820) | ||||
| 366602.Caul_4728 | + | ||||
| 366602.Caul_4056 | (PF01541) | ||||
| 366602.Caul_0453 | (PF01527) | ||||
| 366602.Caul_0420 | + | ||||
| 366602.Caul_3392 | + | ||||
| 366602.Caul_4730 | (PF13565) | ||||
| 366602.Caul_3730 | (PF13276) | ||||
| 366602.Caul_3731 | (PF01527) | ||||
| 366602.Caul_4130 | + | ||||
| 366602.Caul_1471 | (PF14497) | ||||
| 366602.Caul_1273 | (PF00593) | ||||
| 366602.Caul_2259 | (PF01541) | ||||
| 366602.Caul_1865 | (PF00593) | ||||
| 366602.Caul_1866 | (PF04820) | ||||
| 366602.Caul_4092 | (PF04820) | ||||
| 366602.Caul_0248 | (PF05711) | ||||
| 366602.Caul_0395 | + | ||||
| 366602.Caul_1043 | (PF14497) | ||||
| 366602.Caul_2065 | (PF13621) | ||||
| 366602.Caul_4971 | (PF01527) | ||||
| 366602.Caul_4972 | (PF13276) | ||||
| 366602.Caul_4159 | (PF13276) | ||||
| 366602.Caul_4710 | (PF14497) | ||||
| 366602.Caul_4578 | (PF13565) | ||||
| 366602.Caul_4682 | + | ||||
| 366602.Caul_0639 | + | ||||
| 366602.Caul_0478 | + | ||||
| 366602.Caul_1290 | (PF04820) | ||||
| 366602.Caul_2123 | (PF00593) | ||||
| 366602.Caul_3635 | (PF13430) | ||||
| 366602.Caul_3634 | (PF13430) | ||||
| 366602.Caul_4363 | (PF01541) | ||||
| 366602.Caul_4160 | (PF01527) | ||||
| 366602.Caul_0643 | + | ||||
| 366602.Caul_1848 | (PF13565) | ||||
| 366602.Caul_1847 | (PF00135) | ||||
| 366602.Caul_1845 | (PF13621) | ||||
| 366602.Caul_1842 | (PF04820) | ||||
| 366602.Caul_1843 | (PF00593) | ||||
| 366602.Caul_1841 | (PF04820) | ||||
| 366602.Caul_1344 | + | ||||
| 366602.Caul_2138 | (PF04820) | ||||
| 366602.Caul_2003 | (PF01527) | ||||
| 366602.Caul_2002 | (PF13276) | ||||
| 366602.Caul_3600 | (PF01527) | ||||
| 366602.Caul_2167 | + | ||||
| 366602.Caul_1853 | (PF04820) | ||||
| 366602.Caul_1852 | (PF13621) | ||||
| 366602.Caul_0452 | (PF13276) | ||||
| 366602.Caul_1106 | (PF13565) | ||||
| 366602.Caul_1105 | (PF13276) | ||||
| 366602.Caul_1104 | (PF01527) | ||||
| 366602.Caul_1039 | (PF00135) | ||||
| 366602.Caul_1032 | (PF13276) | ||||
| 366602.Caul_1031 | (PF01527) | ||||
| 366602.Caul_3502 | + | ||||
| 366602.Caul_4696 | + | ||||
| 366602.Caul_0669 | (PF13565) | ||||
| 366602.Caul_0841 | (PF01527) | ||||
| 366602.Caul_0840 | (PF13276) | ||||
| 366602.Caul_0339 | (PF01527) | ||||
| 366602.Caul_0537 | (PF14497) | ||||
| 366602.Caul_2684 | + | ||||
| 366602.Caul_3798 | + | ||||
| 366602.Caul_4229 | (PF13276) | ||||
| 366602.Caul_4228 | (PF01527) | ||||
| 366602.Caul_1839 | (PF04820) | ||||
| 366602.Caul_1944 | (PF01527) | ||||
| 366602.Caul_1943 | (PF13276) | ||||
| 366602.Caul_1456 | + | ||||
| 366602.Caul_0468 | + | ||||
| 366602.Caul_4250 | (PF13276) | ||||
| 366602.Caul_3958 | + | ||||
| 366602.Caul_0552 | (PF13276) | ||||
| 366602.Caul_4801 | + | ||||
| 366602.Caul_3559 | (PF13565) | ||||
| 366602.Caul_2400 | (PF00593) | ||||
| 366602.Caul_2407 | (PF00593) | ||||
| 366602.Caul_2409 | (PF13621) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 2.0 (20/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 2.0 (20/10 KEGG proteins)
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