Effective results for Thermotoga petrophila RKU-1 (eggnog40)

Summary

Number of putative secreted proteins: 20
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 20 proteins (2 high, 18 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
390874.Tpet_1757(PF10569)ER
390874.Tpet_1267(PF01670)ER
390874.Tpet_0887(PF03266)(mitochondrial)
390874.Tpet_1797(PF10142)ER
390874.Tpet_0958PF17005ER
390874.Tpet_1778(PF10569)ER
390874.Tpet_1268(PF01670)(plastid)
390874.Tpet_0084(PF07837) (PF02971)
390874.Tpet_0149(PF01927)(mitochondrial)
390874.Tpet_0913(PF01257)
390874.Tpet_0911(PF01257)
390874.Tpet_0105(PF01409)
390874.Tpet_0106(PF01409)
390874.Tpet_0697(PF01257)
390874.Tpet_1372(PF01257)
390874.Tpet_1369(PF01257)
390874.Tpet_1368(PF01257)
390874.Tpet_1367(PF01257)
390874.Tpet_1425(PF01927)
390874.Tpet_0746PF00961

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================