Effective results for Vibrio shilonii AK1 (eggnog40)

Summary

Number of putative secreted proteins: 107
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 107 proteins (1 high, 106 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391591.VSAK1_06775(PF14864) (PF14863)ER; (ER)
391591.VSAK1_19414(PF14864) (PF14863)ER
391591.VSAK1_19749(PF14864) (PF14863)ER
391591.VSAK1_21904(PF14248)ER
391591.VSAK1_25035(PF06500)ER
391591.VSAK1_15927(PF17186)ER
391591.VSAK1_25660(PF13533)ER
391591.VSAK1_19109(PF13533)ER
391591.VSAK1_18679(PF02275)ER
391591.VSAK1_23714(PF12849)ER
391591.VSAK1_17877(PF13533)ER
391591.VSAK1_23099(PF12849)ER
391591.VSAK1_15692(PF12849)ER
391591.VSAK1_19304(PF13533)ER
391591.VSAK1_17467(PF02274)(mitochondrial)
391591.VSAK1_21609(PF13533)ER
391591.VSAK1_25255(PF13533)ER; (ER)
391591.VSAK1_21619(PF02275)ER; (ER)
391591.VSAK1_01177(PF14707)ER
391591.VSAK1_01172(PF14248)ER
391591.VSAK1_23364(PF13533)ER
391591.VSAK1_22509(PF13533)ER
391591.VSAK1_14212(PF12849)ER
391591.VSAK1_17797(PF02275)ER; (ER)
391591.VSAK1_17967(PF12849)ER
391591.VSAK1_18549(PF13533)ER
391591.VSAK1_14480(PF12849)(ER)
391591.VSAK1_26235(PF12849)(mitochondrial)
391591.VSAK1_18022(PF13533)ER
391591.VSAK1_06205(PF13533)(ER)
391591.VSAK1_06360(PF17186)ER
391591.VSAK1_19939(PF06500)ER
391591.VSAK1_05300(PF08180)ER
391591.VSAK1_26010(PF02275)ER
391591.VSAK1_16842(PF13533)ER
391591.VSAK1_13080(PF00669)(plastid)
391591.VSAK1_06505(PF01228) (PF02901)
391591.VSAK1_08536(PF00669)plastid
391591.VSAK1_02299(PF00669)plastid
391591.VSAK1_02989(PF00669)plastid
391591.VSAK1_00285(PF01228) (PF02901)
391591.VSAK1_02999(PF00669)(plastid)
391591.VSAK1_02994(PF00669)plastid
391591.VSAK1_15902(PF05524) (PF02896)
391591.VSAK1_18092(PF01228) (PF02901)
391591.VSAK1_23644(PF01228) (PF02901)
391591.VSAK1_14465(PF13533)(mitochondrial)
391591.VSAK1_17487(PF01228) (PF02901)
391591.VSAK1_08531(PF00669)(plastid)
391591.VSAK1_23584(PF05524) (PF02896)
391591.VSAK1_06520(PF05524) (PF02896)
391591.VSAK1_11143(PF05524) (PF02896)
391591.VSAK1_25580(PF13533)
391591.VSAK1_07474(PF13289)
391591.VSAK1_12825(PF02274)
391591.VSAK1_08431(PF13289)
391591.VSAK1_02984(PF00669)
391591.VSAK1_05350(PF02896)
391591.VSAK1_25905(PF13533)
391591.VSAK1_11138(PF02896)
391591.VSAK1_05710(PF02482)
391591.VSAK1_20559(PF02274)
391591.VSAK1_04920(PF05706)
391591.VSAK1_15572(PF04664)
391591.VSAK1_00627(PF00834)
391591.VSAK1_13025(PF00669)
391591.VSAK1_01577(PF12464)
391591.VSAK1_11445(PF05524)
391591.VSAK1_17022(PF16332)
391591.VSAK1_02034(PF02274)
391591.VSAK1_25835(PF01786)not used
391591.VSAK1_19339(PF01116)
391591.VSAK1_14335(PF01116)
391591.VSAK1_20109(PF02274)
391591.VSAK1_04885(PF00834)
391591.VSAK1_02234(PF00669)
391591.VSAK1_19344(PF01116)
391591.VSAK1_00572(PF01116)
391591.VSAK1_09353(PF00834)
391591.VSAK1_17312(PF13289)
391591.VSAK1_25170(PF01116)
391591.VSAK1_16192(PF12464)
391591.VSAK1_01934(PF02482)
391591.VSAK1_18177(PF13533)
391591.VSAK1_14127(PF02482)
391591.VSAK1_05635(PF02896)
391591.VSAK1_09128PF03175
391591.VSAK1_20054(PF12464)
391591.VSAK1_03660(PF12344)
391591.VSAK1_21474(PF13289)
391591.VSAK1_24750(PF08732)
391591.VSAK1_01107(PF13533)
391591.VSAK1_23484(PF01116)
391591.VSAK1_20049(PF12464)
391591.VSAK1_02079(PF06500)not used
391591.VSAK1_21234(PF08975)
391591.VSAK1_20524(PF10013)not used
391591.VSAK1_19549(PF13533)
391591.VSAK1_06550(PF12344)
391591.VSAK1_13150(PF09811)
391591.VSAK1_25055(PF10063)
391591.VSAK1_19014(PF02274)
391591.VSAK1_25840(PF01786)not used
391591.VSAK1_19239(PF02482)
391591.VSAK1_15397(PF14707)
391591.VSAK1_15392(PF14707)
391591.VSAK1_22489(PF02482)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.0 (8/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================