Effective results for Flavobacteria bacterium BAL38 (eggnog40)

Summary

Number of putative secreted proteins: 22
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 22 proteins (2 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391598.FBBAL38_04480(PF13582)ER
391598.FBBAL38_09644(PF00932)ER
391598.FBBAL38_11034(PF11074)mitochondrial
391598.FBBAL38_00270(PF00332)(mitochondrial)
391598.FBBAL38_04510(PF00932)(ER)
391598.FBBAL38_10944(PF00932)ER
391598.FBBAL38_04260(PF00932)ER
391598.FBBAL38_10959(PF00932)(mitochondrial)
391598.FBBAL38_05155(PF02689)(plastid)
391598.FBBAL38_09034PF05640
391598.FBBAL38_00255(PF00332)
391598.FBBAL38_08045(PF12762)
391598.FBBAL38_00315(PF07766)
391598.FBBAL38_09659(PF12762)
391598.FBBAL38_06940(PF12762)
391598.FBBAL38_06200(PF13661)
391598.FBBAL38_01100(PF12762)
391598.FBBAL38_11219(PF09445)
391598.FBBAL38_08145(PF12762)
391598.FBBAL38_04350(PF12762)
391598.FBBAL38_03290PF07453
391598.FBBAL38_10452(PF10504)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================