Effective results for Roseovarius sp. TM1035 (eggnog40)

Summary

Number of putative secreted proteins: 81
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 81 proteins (3 high, 78 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391613.RTM1035_08464(PF16350) (PF01571) (PF08669)ER
391613.RTM1035_08454(PF16350) (PF01571) (PF08669)ER
391613.RTM1035_00900(PF16350) (PF01571) (PF08669)(ER)
391613.RTM1035_05848(PF01571) (PF08669)(mitochondrial)
391613.RTM1035_16187(PF16350) (PF01571) (PF08669)(ER)
391613.RTM1035_12998(PF01571) (PF08669)(mitochondrial)
391613.RTM1035_03430(PF01571) (PF08669)(mitochondrial)
391613.RTM1035_17447(PF13704)mitochondrial
391613.RTM1035_08024(PF06258)(ER)
391613.RTM1035_11695(PF02230)(mitochondrial)
391613.RTM1035_02998(PF16350) (PF01571) (PF08669)
391613.RTM1035_16607(PF02230)ER
391613.RTM1035_06963(PF05990)ER
391613.RTM1035_05460(PF02230)ER
391613.RTM1035_17367(PF11977)ER
391613.RTM1035_12078(PF03209)(ER)
391613.RTM1035_06453(PF03567)(mitochondrial); mitochondrial
391613.RTM1035_13623(PF00685)mitochondrial
391613.RTM1035_17935(PF13704)(mitochondrial); plastid
391613.RTM1035_02975(PF16350) (PF01571) (PF08669)
391613.RTM1035_01585(PF09585)(mitochondrial)
391613.RTM1035_12028(PF03209)ER
391613.RTM1035_18140(PF05990)ER
391613.RTM1035_17462(PF02230)ER
391613.RTM1035_06023(PF01571) (PF08669)
391613.RTM1035_07649(PF01571) (PF08669)
391613.RTM1035_16272(PF00549) (PF08442)
391613.RTM1035_17452(PF02485)plastid
391613.RTM1035_12373(PF01571) (PF08669)
391613.RTM1035_16632(PF01571) (PF08669)
391613.RTM1035_12728(PF00549) (PF08442)
391613.RTM1035_12743(PF00549) (PF08442)
391613.RTM1035_13618(PF00685)(mitochondrial)
391613.RTM1035_05480(PF01571) (PF08669)
391613.RTM1035_05360(PF06119) PF00094
391613.RTM1035_07609(PF01571) (PF08669)
391613.RTM1035_04885(PF00549)(mitochondrial)
391613.RTM1035_04890(PF00549) (PF08442)
391613.RTM1035_09099(PF01571) (PF08669)
391613.RTM1035_11320PF12873
391613.RTM1035_11215(PF13683)
391613.RTM1035_07468(PF13683)
391613.RTM1035_09623(PF05990)
391613.RTM1035_09713(PF13683)
391613.RTM1035_00140(PF13683)
391613.RTM1035_09573(PF03567)
391613.RTM1035_19856(PF03092)
391613.RTM1035_13563(PF10013)
391613.RTM1035_13748(PF09458)
391613.RTM1035_02285(PF13683)
391613.RTM1035_17457(PF03567)
391613.RTM1035_16267(PF00549)
391613.RTM1035_04445(PF04325)
391613.RTM1035_08019(PF00685)
391613.RTM1035_19391(PF03567)
391613.RTM1035_19396(PF02485)
391613.RTM1035_07549(PF00070)
391613.RTM1035_12733(PF00549)
391613.RTM1035_08044(PF06258)
391613.RTM1035_08049(PF00685)
391613.RTM1035_14807(PF01786)
391613.RTM1035_15997(PF13875)
391613.RTM1035_17287(PF03567)
391613.RTM1035_07098PF00094
391613.RTM1035_19506(PF04325)not used
391613.RTM1035_03740(PF13683)
391613.RTM1035_20226(PF13704)
391613.RTM1035_20221(PF13704)
391613.RTM1035_20131(PF04325)
391613.RTM1035_14592(PF04325)
391613.RTM1035_07984(PF06258)
391613.RTM1035_20231(PF13704)
391613.RTM1035_13333(PF05990)
391613.RTM1035_03295(PF00685)
391613.RTM1035_01590(PF09585)
391613.RTM1035_10540(PF11927)
391613.RTM1035_05745(PF05990)
391613.RTM1035_09543(PF13704)
391613.RTM1035_04655(PF13683)
391613.RTM1035_07664(PF11927)
391613.RTM1035_05928(PF13683)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================