Effective results for Petrotoga mobilis SJ95 (eggnog40)

Summary

Number of putative secreted proteins: 37
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 37 proteins (1 high, 36 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
403833.Pmob_1431(PF16561)ER
403833.Pmob_1135(PF16561)ER
403833.Pmob_0454(PF13394)mitochondrial
403833.Pmob_1742(PF03266)(mitochondrial)
403833.Pmob_0183(PF13353)(plastid)
403833.Pmob_0241(PF07837) (PF02971)
403833.Pmob_1520(PF13394)(mitochondrial)
403833.Pmob_0979(PF13353)(ER)
403833.Pmob_1949(PF13353)
403833.Pmob_0668(PF13353)
403833.Pmob_0669(PF13353)
403833.Pmob_1031(PF04961)
403833.Pmob_0678(PF13353)
403833.Pmob_0649PF01876
403833.Pmob_1905(PF13394)
403833.Pmob_1058(PF13353)
403833.Pmob_0373(PF13394)
403833.Pmob_1460(PF13353)
403833.Pmob_1047(PF13353)
403833.Pmob_1867(PF00862)
403833.Pmob_0123(PF02350)
403833.Pmob_0933(PF02350)
403833.Pmob_0686(PF13353)
403833.Pmob_0687(PF13353)
403833.Pmob_1288(PF02350)
403833.Pmob_1340(PF13353)
403833.Pmob_1519(PF13394)
403833.Pmob_1565(PF13353)
403833.Pmob_1294(PF02350)
403833.Pmob_1561(PF13353)
403833.Pmob_1367(PF07837)
403833.Pmob_0169(PF13394)
403833.Pmob_1570(PF13394)
403833.Pmob_1284(PF02350)
403833.Pmob_0398(PF04961)
403833.Pmob_1144(PF12646)
403833.Pmob_0146(PF09419)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================