Effective results for Xenorhabdus bovienii SS-2004 (eggnog40)

Summary

Number of putative secreted proteins: 297
- Predicted by T4SEpre: 117
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 203 proteins (148 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
406818.XBJ1_1251(PF03796) (PF00772)ER; (ER)
406818.XBJ1_1116PF13358 PF13592(mitochondrial)
406818.XBJ1_0285PF03400(mitochondrial)
406818.XBJ1_3712PF03400(mitochondrial)
406818.XBJ1_3893PF13551 PF13358 PF13592
406818.XBJ1_3892PF03400(mitochondrial)
406818.XBJ1_0768PF13551 PF13358 PF13592
406818.XBJ1_3412PF03400(mitochondrial)
406818.XBJ1_1708PF03400(mitochondrial)
406818.XBJ1_2602PF03400(mitochondrial)
406818.XBJ1_2132PF03400(mitochondrial)
406818.XBJ1_3171PF03400(mitochondrial)
406818.XBJ1_3776(PF00275)(ER)
406818.XBJ1_3771PF03400(mitochondrial)
406818.XBJ1_2145PF13551 PF13358 PF13592
406818.XBJ1_1737PF13551 PF13358 PF13592
406818.XBJ1_1734PF03400(mitochondrial)
406818.XBJ1_2140+mitochondrial
406818.XBJ1_2143+(mitochondrial); mitochondrial
406818.XBJ1_4077+(mitochondrial); mitochondrial
406818.XBJ1_2386PF13551 PF13358 PF13592
406818.XBJ1_2090PF03400(mitochondrial)
406818.XBJ1_3547PF03400(mitochondrial)
406818.XBJ1_3168PF13551 PF13358 PF13592
406818.XBJ1_2969PF03400(mitochondrial)
406818.XBJ1_0236+ER
406818.XBJ1_2620PF13551 PF13358 PF13592
406818.XBJ1_2622PF13551 PF13358 PF13592
406818.XBJ1_2391PF03400(mitochondrial)
406818.XBJ1_2081+(ER)
406818.XBJ1_2083PF03400(mitochondrial)
406818.XBJ1_2579PF13551 PF13358 PF13592
406818.XBJ1_2215+ER
406818.XBJ1_2574PF03400(mitochondrial)
406818.XBJ1_3112PF13551 PF13358 PF13592
406818.XBJ1_0710PF03400(mitochondrial)
406818.XBJ1_0951+(mitochondrial)
406818.XBJ1_0827PF13551 PF13358 PF13592
406818.XBJ1_3592PF03400(mitochondrial)
406818.XBJ1_0221PF13551 PF13358 PF13592
406818.XBJ1_4120PF03400(mitochondrial)
406818.XBJ1_2363+ER
406818.XBJ1_2767PF13551 PF13358 PF13592
406818.XBJ1_3364PF03400(mitochondrial)
406818.XBJ1_3109PF03400(mitochondrial)
406818.XBJ1_3292PF03400(mitochondrial)
406818.XBJ1_0459(PF01609)mitochondrial; (mitochondrial)
406818.XBJ1_1983PF03400(mitochondrial)
406818.XBJ1_1985PF03400(mitochondrial)
406818.XBJ1_1853PF03400(mitochondrial)
406818.XBJ1_1279(PF14464)(mitochondrial)
406818.XBJ1_2171PF03400(mitochondrial)
406818.XBJ1_3989(PF04383)ER; (ER)
406818.XBJ1_3356PF03400(mitochondrial)
406818.XBJ1_1519(PF01609)ER
406818.XBJ1_0026+ER
406818.XBJ1_1466+ER
406818.XBJ1_0597+(mitochondrial)
406818.XBJ1_1867(PF01609)(mitochondrial)
406818.XBJ1_4039+(mitochondrial)
406818.XBJ1_3908PF03400(mitochondrial)
406818.XBJ1_0477+ER
406818.XBJ1_1874PF13551 PF13358 PF13592
406818.XBJ1_1872PF03400(mitochondrial)
406818.XBJ1_1654+(ER)
406818.XBJ1_1099+ER
406818.XBJ1_1142+ER
406818.XBJ1_2753PF13551 PF13358 PF13592
406818.XBJ1_2350PF13551 PF13358 PF13592
406818.XBJ1_0912+ER
406818.XBJ1_2820PF03400(mitochondrial)
406818.XBJ1_0461PF03400(mitochondrial)
406818.XBJ1_1407PF03400(mitochondrial)
406818.XBJ1_1409PF03400(mitochondrial)
406818.XBJ1_0860PF03400(mitochondrial)
406818.XBJ1_0862PF03400(mitochondrial)
406818.XBJ1_1313+(mitochondrial); (plastid)
406818.XBJ1_2325+ER
406818.XBJ1_3921PF03400(mitochondrial)
406818.XBJ1_3813PF13551 PF13358 PF13592
406818.XBJ1_3498PF13551 PF13358 PF13592
406818.XBJ1_3496PF14564(mitochondrial)
406818.XBJ1_3782PF03400(mitochondrial)
406818.XBJ1_0075PF13551 PF13358 PF13592
406818.XBJ1_0096PF13551 PF13358 PF13592
406818.XBJ1_3313PF03400(mitochondrial)
406818.XBJ1_3041+ER
406818.XBJ1_0066PF13551 PF13358 PF13592
406818.XBJ1_2801PF13551 PF13358 PF13592
406818.XBJ1_2804+ER
406818.XBJ1_3684+ER
406818.XBJ1_1428PF03400(mitochondrial)
406818.XBJ1_0882PF03400(mitochondrial)
406818.XBJ1_0240PF13551 PF13358 PF13592
406818.XBJ1_1754PF03400(mitochondrial)
406818.XBJ1_1759(PF00275)(ER)
406818.XBJ1_1208PF13551 PF13358 PF13592
406818.XBJ1_1114PF13551 PF13358 PF13592
406818.XBJ1_2017PF13551 PF13358 PF13592
406818.XBJ1_3273PF03400(mitochondrial)
406818.XBJ1_3057PF03400(mitochondrial)
406818.XBJ1_3692PF13551 PF13358 PF13592
406818.XBJ1_1923+ER
406818.XBJ1_1432PF13551 PF13358 PF13592
406818.XBJ1_1814+ER
406818.XBJ1_1321PF03400(mitochondrial)
406818.XBJ1_0228+ER
406818.XBJ1_2465+ER
406818.XBJ1_2003(PF04383)ER; (ER)
406818.XBJ1_0647PF03400(mitochondrial)
406818.XBJ1_0510+ER
406818.XBJ1_1774+mitochondrial; (mitochondrial)
406818.XBJ1_0749PF03400(mitochondrial)
406818.XBJ1_1583PF03400(mitochondrial)
406818.XBJ1_1765PF03400(mitochondrial)
406818.XBJ1_0758PF13551 PF13358 PF13592
406818.XBJ1_0753PF13551 PF13358 PF13592
406818.XBJ1_3408PF03400(mitochondrial)
406818.XBJ1_2661PF03400(mitochondrial)
406818.XBJ1_3999+ER
406818.XBJ1_3405PF03400(mitochondrial)
406818.XBJ1_1978(PF01609)(ER)
406818.XBJ1_1573PF12255 (PF12256)
406818.XBJ1_0760+(mitochondrial)
406818.XBJ1_2605(PF01609)(ER)
406818.XBJ1_1554(PF03796) (PF00772)
406818.XBJ1_3370(PF03796) (PF00772)
406818.XBJ1_1190(PF03796) (PF00772)
406818.XBJ1_3108+(PF01609)
406818.XBJ1_3913(PF03796) (PF00772)
406818.XBJ1_1885(PF01609)(ER)
406818.XBJ1_4219+(mitochondrial)
406818.XBJ1_3019(PF07678)(mitochondrial)
406818.XBJ1_1387(PF00959)(ER)
406818.XBJ1_3069(PF01609)(mitochondrial)
406818.XBJ1_0864PF03400(mitochondrial); not used
406818.XBJ1_1790PF03400(plastid)
406818.XBJ1_3326(PF01609)(ER)
406818.XBJ1_1934PF12255 (PF12256)
406818.XBJ1_2910(PF01609)(ER)
406818.XBJ1_2580(PF01609)(ER)
406818.XBJ1_3887PF13358(mitochondrial)
406818.XBJ1_1572(PF03538)
406818.XBJ1_0179(PF01764)
406818.XBJ1_1480PF02371
406818.XBJ1_1154PF02371
406818.XBJ1_2182PF13551
406818.XBJ1_1804+
406818.XBJ1_4299PF02371
406818.XBJ1_3564PF02371
406818.XBJ1_2057(PF14464)
406818.XBJ1_3419PF13358
406818.XBJ1_0761+
406818.XBJ1_0816(PF00275)
406818.XBJ1_1963(PF01609)
406818.XBJ1_4285+
406818.XBJ1_4283+
406818.XBJ1_1150+
406818.XBJ1_2793+
406818.XBJ1_3948PF02371
406818.XBJ1_2696+
406818.XBJ1_3179PF02371
406818.XBJ1_0773PF13358
406818.XBJ1_3778PF03400
406818.XBJ1_3774(PF00275)
406818.XBJ1_3777PF03400
406818.XBJ1_3603+
406818.XBJ1_1602+
406818.XBJ1_1044+
406818.XBJ1_2638+
406818.XBJ1_2632+
406818.XBJ1_2147(PF01609)
406818.XBJ1_3380+
406818.XBJ1_0707+
406818.XBJ1_0492PF03439
406818.XBJ1_1610+
406818.XBJ1_4246PF02371
406818.XBJ1_3978+
406818.XBJ1_3971+
406818.XBJ1_0715PF02371
406818.XBJ1_0714PF02371
406818.XBJ1_0957+
406818.XBJ1_3595PF03400
406818.XBJ1_1994+
406818.XBJ1_1849(PF14464)
406818.XBJ1_4231+
406818.XBJ1_4125PF02371
406818.XBJ1_4126PF02371
406818.XBJ1_2163+
406818.XBJ1_2165(PF13603)
406818.XBJ1_2184PF13358
406818.XBJ1_3566PF02371
406818.XBJ1_0969+
406818.XBJ1_0030+
406818.XBJ1_0856+
406818.XBJ1_3587PF13358
406818.XBJ1_1987+
406818.XBJ1_1292+
406818.XBJ1_1757(PF00275)
406818.XBJ1_3140+
406818.XBJ1_0327+
406818.XBJ1_2378+
406818.XBJ1_2377+
406818.XBJ1_2190PF03400
406818.XBJ1_3355(PF01609)
406818.XBJ1_3139PF13358
406818.XBJ1_0732+
406818.XBJ1_3002PF16485
406818.XBJ1_3001PF16485
406818.XBJ1_0023+
406818.XBJ1_1880(PF01609)
406818.XBJ1_1881PF03400
406818.XBJ1_1889PF02371
406818.XBJ1_0207+
406818.XBJ1_3836(PF00275)
406818.XBJ1_0907+
406818.XBJ1_1503(PF01764)
406818.XBJ1_1890PF02371
406818.XBJ1_0278(PF00959)
406818.XBJ1_0149PF03400
406818.XBJ1_0300PF03400
406818.XBJ1_1258(PF00959)
406818.XBJ1_4373(PF05929)
406818.XBJ1_2683PF03400
406818.XBJ1_2681PF03400
406818.XBJ1_1545+
406818.XBJ1_3935(PF14464)
406818.XBJ1_2220PF02371
406818.XBJ1_3806+
406818.XBJ1_4162+
406818.XBJ1_0919+
406818.XBJ1_3796+
406818.XBJ1_1404PF02371
406818.XBJ1_1405PF02371
406818.XBJ1_1311PF02371
406818.XBJ1_1580PF13358
406818.XBJ1_0268+
406818.XBJ1_1227(PF04383)
406818.XBJ1_4306PF03400
406818.XBJ1_4300PF02371
406818.XBJ1_1134PF03400
406818.XBJ1_2038PF13894
406818.XBJ1_2789(PF01609)
406818.XBJ1_3924+
406818.XBJ1_2818PF03400
406818.XBJ1_1239(PF14464)
406818.XBJ1_1121+
406818.XBJ1_2799(PF00959)
406818.XBJ1_2027+
406818.XBJ1_2025+
406818.XBJ1_2242+
406818.XBJ1_3268+
406818.XBJ1_0663PF02371
406818.XBJ1_0666(PF14464)
406818.XBJ1_2805(PF01609)
406818.XBJ1_1424(PF01609)
406818.XBJ1_1339(PF01609)
406818.XBJ1_1330PF02371
406818.XBJ1_1202(PF00959)
406818.XBJ1_4095PF02371
406818.XBJ1_4140PF03400not used
406818.XBJ1_3873+
406818.XBJ1_0601+
406818.XBJ1_3055(PF01609)
406818.XBJ1_3056PF13358
406818.XBJ1_1920+
406818.XBJ1_1192+
406818.XBJ1_1329PF02371
406818.XBJ1_1749+
406818.XBJ1_4082PF03400
406818.XBJ1_4157+
406818.XBJ1_4333+
406818.XBJ1_1211+
406818.XBJ1_4152+
406818.XBJ1_3206(PF13603)
406818.XBJ1_3194PF03400
406818.XBJ1_3420+
406818.XBJ1_3422+
406818.XBJ1_1171+
406818.XBJ1_2582PF13358
406818.XBJ1_3503(PF01764)
406818.XBJ1_0631PF02371
406818.XBJ1_0632PF02371
406818.XBJ1_3180PF02371
406818.XBJ1_0569(PF03538)
406818.XBJ1_1761PF03400
406818.XBJ1_1760PF03400
406818.XBJ1_0161PF03400
406818.XBJ1_0162+
406818.XBJ1_2648+
406818.XBJ1_2060PF02371
406818.XBJ1_2467+
406818.XBJ1_0620PF02371
406818.XBJ1_3085+
406818.XBJ1_0998(PF05929)
406818.XBJ1_3156+
406818.XBJ1_0751PF02371

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 2.125 (17/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================