Metamenu

Effective results for Coprococcus eutactus ATCC 27759 (eggnog40)

Summary

Number of putative secreted proteins: 73
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 73 proteins (6 high, 67 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
411474.COPEUT_01099(PF16875) (PF16874) (PF02065)
411474.COPEUT_00873(PF01554)ER
411474.COPEUT_00454(PF01554)ER
411474.COPEUT_00593(PF16875) (PF16874) (PF02065)
411474.COPEUT_01856(PF16875) (PF16874) (PF02065)
411474.COPEUT_01192(PF06541)(mitochondrial)
411474.COPEUT_00623(PF01554)mitochondrial
411474.COPEUT_01237(PF01554)ER; (ER)
411474.COPEUT_01871(PF05698)ER
411474.COPEUT_01870(PF05698)ER
411474.COPEUT_00782(PF09511)mitochondrial; (mitochondrial)
411474.COPEUT_00161(PF13173)mitochondrial; (mitochondrial)
411474.COPEUT_02326(PF01554)ER; (ER)
411474.COPEUT_01171(PF01554)ER
411474.COPEUT_02241(PF01554)(ER)
411474.COPEUT_00657(PF16875) (PF16874) (PF02065)
411474.COPEUT_02387(PF06541)ER
411474.COPEUT_01456(PF03266)(plastid)
411474.COPEUT_00136(PF01554)(mitochondrial)
411474.COPEUT_00945(PF02446)(mitochondrial)
411474.COPEUT_00574(PF04432) (PF04422)
411474.COPEUT_00563(PF04432) (PF04422)
411474.COPEUT_00564(PF04432) (PF04422)
411474.COPEUT_02336(PF12158)(ER)
411474.COPEUT_01098(PF01554)
411474.COPEUT_00457(PF01554)
411474.COPEUT_02293(PF01554)
411474.COPEUT_01082(PF01795)
411474.COPEUT_00840(PF13173)
411474.COPEUT_00843(PF13173)
411474.COPEUT_01269(PF01554)
411474.COPEUT_00601(PF01554)
411474.COPEUT_01526(PF13173)
411474.COPEUT_01992(PF01807)
411474.COPEUT_02372(PF13910)
411474.COPEUT_02081(PF01554)
411474.COPEUT_02885(PF01554)
411474.COPEUT_00950(PF08123)
411474.COPEUT_00126(PF01991)
411474.COPEUT_00129PF03179
411474.COPEUT_01947(PF01554)
411474.COPEUT_02561(PF01554)
411474.COPEUT_02892(PF01795)
411474.COPEUT_02780(PF04446)
411474.COPEUT_01224(PF02229)
411474.COPEUT_01442(PF01554)
411474.COPEUT_01953PF00641
411474.COPEUT_01035(PF02938)
411474.COPEUT_00365(PF13173)
411474.COPEUT_01569(PF02065)
411474.COPEUT_02231(PF01554)
411474.COPEUT_01570(PF01554)
411474.COPEUT_00518(PF12158)
411474.COPEUT_02202(PF02446)
411474.COPEUT_01756(PF01807)
411474.COPEUT_01713(PF02938)
411474.COPEUT_00753(PF01554)
411474.COPEUT_01249(PF01807)
411474.COPEUT_00531(PF01554)
411474.COPEUT_02919(PF12646)
411474.COPEUT_02663(PF02229)
411474.COPEUT_02485(PF01807)
411474.COPEUT_01292(PF06541)
411474.COPEUT_00527(PF12158)
411474.COPEUT_01921(PF13173)
411474.COPEUT_01925(PF13173)not used
411474.COPEUT_01427(PF05698)
411474.COPEUT_00540(PF02446)
411474.COPEUT_02737PF02026
411474.COPEUT_02739PF02026not used
411474.COPEUT_02738PF02026
411474.COPEUT_00092(PF13173)
411474.COPEUT_02751PF15636

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================