Effective results for Geobacillus thermodenitrificans NG80-2 (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 23 proteins (0 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
420246.GTNG_1245(PF01610)mitochondrial
420246.GTNG_0785(PF01610)mitochondrial
420246.GTNG_2649(PF02675)(mitochondrial); mitochondrial
420246.GTNG_3180(PF01610)mitochondrial
420246.GTNG_2066(PF01610)mitochondrial
420246.GTNG_3179(PF05684)ER
420246.GTNG_0232(PF01610)mitochondrial
420246.GTNG_1193(PF01610)mitochondrial
420246.GTNG_1242(PF05684)
420246.GTNG_1253(PF02675)
420246.GTNG_0314(PF01610)
420246.GTNG_0325(PF13151)
420246.GTNG_3203(PF08950)
420246.GTNG_3197(PF08950)
420246.GTNG_1584(PF01610)
420246.GTNG_2844(PF08761)
420246.GTNG_0146(PF01610)
420246.GTNG_2048(PF01610)
420246.GTNG_0972(PF13921)
420246.GTNG_2638(PF08761)
420246.GTNG_1548(PF02675)
420246.GTNG_2761(PF12606)
420246.GTNG_2501(PF13921)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================