Effective results for Thiomonas arsenitoxydans (eggnog40)

Summary

Number of putative secreted proteins: 72
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 72 proteins (3 high, 69 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
426114.THI_2342				(PF04143)	(ER)
426114.THI_2341				(PF04143)	ER
426114.THI_2394				(PF11563)	mitochondrial
426114.THI_0623				PF11074	mitochondrial; (mitochondrial)
426114.THI_2412				(PF04143)	ER
426114.THI_2413				(PF04143)	ER
426114.THI_3734				(PF16036)	ER
426114.THI_2844				(PF04143)	ER; (plastid)
426114.THI_0736				(PF12483)	ER
426114.THI_1931				(PF10571)	mitochondrial
426114.THI_2905				(PF16036)	ER
426114.THI_2337				(PF11563)	ER
426114.THI_3689				PF11074	mitochondrial; (mitochondrial)
426114.THI_2219				(PF01695)	(ER)
426114.THI_1306				(PF01695)	(ER)
426114.THI_0459				(PF01695)	(ER)
426114.THI_3123				(PF05598)	(plastid)
426114.THI_2657				(PF03952) (PF00113)
426114.THI_2539				(PF01695)	(ER)
426114.THI_3381				(PF04143)	plastid
426114.THI_0525				(PF03952) (PF00113)
426114.THI_3733				(PF16036)	(ER)
426114.THI_2130				(PF03952) (PF00113)
426114.THI_0777				(PF11563)
426114.THI_0956				(PF01695)
426114.THI_1967				PF05203
426114.THI_2005				(PF05598)
426114.THI_2003				(PF05598)
426114.THI_1376				(PF01695)
426114.THI_2016				(PF03050)
426114.THI_2549				(PF01695)
426114.THI_1093				(PF03050)
426114.THI_1316				(PF03050)
426114.THI_2324				(PF01695)
426114.THI_2366				(PF01695)
426114.THI_1326				(PF04143)
426114.THI_1435				(PF01695)
426114.THI_0691				(PF01695)
426114.THI_0871				(PF05598)
426114.THI_1509				(PF11563)
426114.THI_0470				(PF16155)
426114.THI_3111				(PF05598)
426114.THI_0065				(PF05598)
426114.THI_1298				(PF05598)
426114.THI_1297				(PF01695)
426114.THI_0077				(PF01695)
426114.THI_1709				(PF03050)
426114.THI_2883				(PF03050)
426114.THI_0626				(PF03050)
426114.THI_2380				(PF11563)
426114.THI_1270				(PF13429)
426114.THI_1383				(PF00342)
426114.THI_0380				(PF13429)
426114.THI_0520				(PF00342)
426114.THI_0521				(PF00342)
426114.THI_3390				(PF05598)
426114.THI_1467				(PF05598)
426114.THI_2852				(PF05598)
426114.THI_0722				(PF03050)
426114.THI_0721				(PF03050)
426114.THI_0506				(PF01695)
426114.THI_0501				(PF05598)
426114.THI_3068				(PF01695)
426114.THI_3062				(PF03050)
426114.THI_1804				(PF05598)
426114.THI_2878				(PF05598)
426114.THI_2346				(PF01695)
426114.THI_3188				(PF05598)
426114.THI_2027				(PF01695)
426114.THI_2026				(PF03050)
426114.THI_0981				(PF05598)
426114.THI_2028				(PF05598)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================