Effective results for Staphylococcus hominis subsp. hominis C80 (eggnog40)

Summary

Number of putative secreted proteins: 21
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 21 proteins (9 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
435837.HMPREF0798_01368(PF11070)ER
435837.HMPREF0798_00557PF05257ER
435837.HMPREF0798_00942PF05257ER
435837.HMPREF0798_01521(PF00344)(mitochondrial)
435837.HMPREF0798_00681(PF05154)ER
435837.HMPREF0798_01230PF05257ER
435837.HMPREF0798_01783(PF03596)ER
435837.HMPREF0798_00539(PF05154)ER
435837.HMPREF0798_01751(PF03596)ER
435837.HMPREF0798_01464PF05257(ER)
435837.HMPREF0798_00862PF05257(ER)
435837.HMPREF0798_01115PF05257(plastid)
435837.HMPREF0798_01578PF05257(ER)
435837.HMPREF0798_01992(PF03630)
435837.HMPREF0798_01662(PF13910)
435837.HMPREF0798_01461PF05257
435837.HMPREF0798_01096(PF00344)
435837.HMPREF0798_01793(PF05154)
435837.HMPREF0798_00880(PF05495)
435837.HMPREF0798_02078(PF05154)
435837.HMPREF0798_01167PF05257

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================