Effective results for Acholeplasma laidlawii PG-8A (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 26 proteins (0 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
441768.ACL_0971(PF01813)(mitochondrial)
441768.ACL_0977(PF00137)ER
441768.ACL_0117(PF04231)ER
441768.ACL_1174(PF01992)mitochondrial; (mitochondrial)
441768.ACL_1172(PF00137)ER
441768.ACL_1169(PF16886)(mitochondrial)
441768.ACL_0142(PF11074)(mitochondrial)
441768.ACL_0987(PF00137)(ER)
441768.ACL_0978(PF01496)
441768.ACL_0973(PF16886)
441768.ACL_0974(PF01990)
441768.ACL_0975(PF01992)
441768.ACL_0555(PF01795)
441768.ACL_0154(PF04231)
441768.ACL_0155(PF04231)
441768.ACL_0439(PF16804)
441768.ACL_1061(PF17167)
441768.ACL_0160(PF04231)
441768.ACL_1398(PF14249)
441768.ACL_0729(PF17167)
441768.ACL_0039(PF17167)
441768.ACL_0569(PF02475)
441768.ACL_0915(PF01795)
441768.ACL_1173(PF01496)
441768.ACL_1171(PF01990)
441768.ACL_1167(PF01813)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================