Effective results for Cellulomonas flavigena DSM 20109 (eggnog40)

Summary

Number of putative secreted proteins: 61
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 61 proteins (16 high, 45 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
446466.Cfla_0905PF00331 (PF02018) (PF00553)ER
446466.Cfla_1515(PF00759) (PF02018) (PF07679)mitochondrial
446466.Cfla_3024PF00331 (PF00553) (PF03664)ER
446466.Cfla_2024PF00331 (PF00553)ER
446466.Cfla_2848(PF04886) (PF03664)mitochondrial
446466.Cfla_0016(PF00759) (PF00553)mitochondrial; (ER)
446466.Cfla_3563(PF00759) (PF00553)ER
446466.Cfla_3031(PF00759) (PF02018)(mitochondrial); (ER)
446466.Cfla_0139(PF00759) (PF00553)(ER)
446466.Cfla_3558PF00331 (PF00553)mitochondrial
446466.Cfla_0638PF00331 (PF02018)ER; (ER)
446466.Cfla_0639PF00331 (PF02018)ER
446466.Cfla_0245PF00331 (PF00457)ER
446466.Cfla_3531PF00331 (PF00553)(ER)
446466.Cfla_0376PF00331ER; (ER)
446466.Cfla_0179(PF00553)mitochondrial
446466.Cfla_0175(PF00553)ER
446466.Cfla_0172(PF00553)mitochondrial
446466.Cfla_2913(PF00553)mitochondrial
446466.Cfla_1572(PF00553)ER
446466.Cfla_2327PF00331(mitochondrial)
446466.Cfla_3120(PF00553)ER; mitochondrial
446466.Cfla_0338(PF00553)mitochondrial; (mitochondrial)
446466.Cfla_0246(PF00457)(mitochondrial); (ER)
446466.Cfla_0242(PF00553)ER
446466.Cfla_0490(PF00553)ER
446466.Cfla_2509(PF00553)ER
446466.Cfla_3105(PF00553)ER; mitochondrial
446466.Cfla_0316(PF00553)mitochondrial
446466.Cfla_1429(PF00553)ER
446466.Cfla_3169(PF00553)ER
446466.Cfla_3168(PF00553)ER
446466.Cfla_3152(PF03639)ER
446466.Cfla_1897(PF00553)mitochondrial; (ER)
446466.Cfla_2811(PF00553)ER
446466.Cfla_1173(PF09683)(mitochondrial)
446466.Cfla_3043(PF00553)mitochondrial
446466.Cfla_2237(PF01453)ER
446466.Cfla_1029(PF00553)ER
446466.Cfla_2487PF00331(ER)
446466.Cfla_2139(PF01453)ER
446466.Cfla_0244(PF00457)(mitochondrial)
446466.Cfla_1229(PF02182) (PF13391)
446466.Cfla_3547PF00331(ER)
446466.Cfla_3244(PF07679)
446466.Cfla_1332(PF03639)
446466.Cfla_2912(PF00553)
446466.Cfla_2048PF00331
446466.Cfla_0035(PF03726)
446466.Cfla_1310(PF00553)
446466.Cfla_0809PF00331
446466.Cfla_1307(PF00553)
446466.Cfla_1518(PF03726)
446466.Cfla_0457(PF01443)
446466.Cfla_2743PF08213not used
446466.Cfla_0449PF07460
446466.Cfla_1896(PF00553)
446466.Cfla_1575(PF01443)
446466.Cfla_3262(PF13391)
446466.Cfla_3293(PF11977)
446466.Cfla_3271(PF13391)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================