Effective results for Sphingobium japonicum UT26S (eggnog40)

Summary

Number of putative secreted proteins: 78
- Predicted by T4SEpre: 56
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 30 proteins (0 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
452662.SJA_C1-08070+mitochondrial
452662.SJA_C2-01790+(ER); (mitochondrial)
452662.SJA_C1-00260(PF02195)(ER)
452662.SJA_C1-21120+ER; (ER)
452662.SJA_C1-21840+ER
452662.SJA_C2-05460+ER
452662.SJA_C1-13340(PF06455)ER
452662.SJA_C1-14350(PF01541)mitochondrial; (mitochondrial)
452662.SJA_C1-22430+(ER)
452662.SJA_C1-29260(PF01541)mitochondrial
452662.SJA_C1-25340+ER
452662.SJA_C1-26840+(mitochondrial)
452662.SJA_C2-03680(PF07110)(mitochondrial); mitochondrial
452662.SJA_C1-13540+(mitochondrial)
452662.SJA_C1-12890+(mitochondrial)
452662.SJA_C1-14020+ER
452662.SJA_C2-04730(PF02195)(mitochondrial)
452662.SJA_C1-04920+(ER)
452662.SJA_C1-33770(PF02933)(ER)
452662.SJA_C1-09880+(mitochondrial)
452662.SJA_C1-34680+(mitochondrial)
452662.SJA_C1-04450+(plastid)
452662.SJA_C1-34550(PF01541)(mitochondrial)
452662.SJA_C1-10950+(ER)
452662.SJA_C1-33230(PF01541)(mitochondrial)
452662.SJA_C1-15490+
452662.SJA_C1-22600(PF01541)
452662.SJA_C1-10050+
452662.SJA_C1-20280(PF02195)
452662.SJA_C1-29360+
452662.SJA_C1-21480+
452662.SJA_C1-01500+
452662.SJA_C2-03980+
452662.SJA_C1-34460+
452662.SJA_C1-06290+
452662.SJA_C1-24860+
452662.SJA_C1-27340+
452662.SJA_C1-29530(PF03031)
452662.SJA_C1-31760+
452662.SJA_C1-22610+
452662.SJA_C1-26090(PF02195)
452662.SJA_C2-04280+
452662.SJA_C2-04350+
452662.SJA_C1-04400(PF02195)
452662.SJA_C1-03540(PF02195)
452662.SJA_C1-28590+
452662.SJA_C1-14360+
452662.SJA_C2-05890(PF02195)
452662.SJA_C1-29880(PF02195)
452662.SJA_C1-33850+
452662.SJA_C1-32850+
452662.SJA_C1-17140(PF01541)
452662.SJA_C1-25960+
452662.SJA_C1-25560+
452662.SJA_C1-16810+
452662.SJA_C1-09770+
452662.SJA_C1-20100+
452662.SJA_C2-04740+
452662.SJA_C1-34510+
452662.SJA_C1-01000(PF01541)
452662.SJA_C1-05580(PF07110)
452662.SJA_C1-05310(PF03332)
452662.SJA_C1-32250+
452662.SJA_C1-24300(PF01541)
452662.SJA_C1-28340+
452662.SJA_C1-33070(PF03332)
452662.SJA_C1-05540(PF07110)
452662.SJA_C2-04460(PF02195)
452662.SJA_C1-32620(PF16715)
452662.SJA_C1-01670+
452662.SJA_C1-32530+
452662.SJA_C1-05800+
452662.SJA_C1-04560+
452662.SJA_C2-00170(PF02195)
452662.SJA_C1-18380(PF02195)
452662.SJA_C1-10730+
452662.SJA_C1-31880(PF02195)
452662.SJA_C1-21810(PF01541)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 2.0 (20/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================