Effective results for Bacteroides fragilis 3_1_12 (eggnog40)

Summary

Number of putative secreted proteins: 362
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 78 eukaryotic-like domains, contained in 362 proteins (102 high, 260 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
457424.BFAG_03492(PF00703) (PF16353) (PF02836) (PF02929) (PF00754) (PF02837)ER
457424.BFAG_03355(PF00703) (PF16353) (PF02836) (PF02837) (PF02929)ER
457424.BFAG_00263(PF00703) (PF16353) (PF02836) (PF02837) (PF02929)ER
457424.BFAG_02845(PF00703) (PF02929) (PF02836) (PF02837) (PF16353)(ER)
457424.BFAG_03356(PF00754) (PF02838) (PF13287) (PF00728)ER
457424.BFAG_03942(PF00703) (PF02929) (PF02836) (PF02837)ER
457424.BFAG_02678PF16334 PF08760 PF16335 PF17168ER
457424.BFAG_02666PF16334 PF08760 PF16335 PF17168ER
457424.BFAG_00071(PF00703) (PF02929) (PF02836) (PF02837) (PF16353)
457424.BFAG_01544(PF00703) (PF02836) (PF02837)ER
457424.BFAG_00567(PF00703) (PF02836) (PF02837)ER
457424.BFAG_01003(PF00703) (PF02836) (PF02837)(ER)
457424.BFAG_02679(PF00703) (PF02836) (PF02837)ER
457424.BFAG_01077(PF00703) (PF02836) (PF02837)ER
457424.BFAG_01074(PF00703) (PF02836) (PF02837)ER
457424.BFAG_01070(PF02838) (PF00754) (PF00728)ER
457424.BFAG_02343(PF00703) (PF02836) (PF00754) (PF02837)
457424.BFAG_02641(PF02838) (PF00728)(mitochondrial)
457424.BFAG_02642(PF00703) (PF02836) (PF02837)(mitochondrial)
457424.BFAG_00860(PF02687) (PF12704)mitochondrial
457424.BFAG_00856(PF02687) (PF12704)mitochondrial
457424.BFAG_03354(PF01120) (PF00754)ER
457424.BFAG_00269(PF00703) (PF02837)(ER); ER
457424.BFAG_01211(PF02687) (PF12704)(mitochondrial)
457424.BFAG_00850(PF02687) (PF12704)mitochondrial
457424.BFAG_00076(PF02838) (PF00728)ER
457424.BFAG_00070(PF01120) (PF00754)ER
457424.BFAG_01227(PF00703) (PF02836) (PF00754) (PF02837)
457424.BFAG_02620(PF14684) (PF03572)(ER)
457424.BFAG_00844(PF02687) (PF12704)mitochondrial; (mitochondrial)
457424.BFAG_00846(PF02687) (PF12704)mitochondrial
457424.BFAG_00848(PF02687) (PF12704)mitochondrial
457424.BFAG_02196(PF02838) (PF00728)ER
457424.BFAG_03487(PF00754) (PF01120)ER
457424.BFAG_04612(PF00703) (PF02836) (PF02837)plastid
457424.BFAG_01523(PF02687) (PF12704)mitochondrial
457424.BFAG_00940(PF02687) (PF12704)(mitochondrial)
457424.BFAG_00942(PF02687) (PF12704)mitochondrial
457424.BFAG_03367(PF02838) (PF00728)ER
457424.BFAG_03360(PF02838) (PF00728)ER
457424.BFAG_01775(PF02687) (PF12704)mitochondrial
457424.BFAG_01771(PF02687) (PF12704)mitochondrial
457424.BFAG_01773(PF02687) (PF12704)(ER)
457424.BFAG_00041(PF02687) (PF12704)(ER)
457424.BFAG_01948(PF02687) (PF12704)ER
457424.BFAG_01942(PF02687) (PF12704)mitochondrial
457424.BFAG_01943(PF02687) (PF12704)mitochondrial
457424.BFAG_01941(PF02687) (PF12704)mitochondrial
457424.BFAG_01944(PF02687) (PF12704)mitochondrial
457424.BFAG_01945(PF02687) (PF12704)mitochondrial
457424.BFAG_02007(PF14684) (PF03572)ER
457424.BFAG_04470(PF14684) (PF03572)ER
457424.BFAG_01566(PF02838) (PF00728)ER
457424.BFAG_00215(PF00754) (PF01120)ER
457424.BFAG_03468(PF02687) (PF12704)mitochondrial
457424.BFAG_03885(PF02838) (PF00728)ER; (ER)
457424.BFAG_04069(PF02687) (PF12704)mitochondrial
457424.BFAG_00223(PF09112) (PF09113)ER
457424.BFAG_01066(PF02838) (PF00728)ER
457424.BFAG_01072(PF02838) (PF00728)ER
457424.BFAG_01946(PF02687) (PF12704)mitochondrial
457424.BFAG_04142PF17170ER
457424.BFAG_03110(PF06250)mitochondrial
457424.BFAG_01038(PF02719)mitochondrial
457424.BFAG_02657PF17170ER
457424.BFAG_02653(PF07944)ER
457424.BFAG_00900(PF00953)ER
457424.BFAG_00492PF17170ER
457424.BFAG_04158(PF07944)ER
457424.BFAG_04151PF17170ER
457424.BFAG_03106(PF06250)(mitochondrial)
457424.BFAG_03107(PF00589)mitochondrial
457424.BFAG_01055(PF16757) (PF01120)(plastid)
457424.BFAG_01204(PF03572)ER
457424.BFAG_00861(PF02687)(mitochondrial)
457424.BFAG_00915PF01823ER
457424.BFAG_00919(PF13905)ER
457424.BFAG_01739(PF00589)(mitochondrial)
457424.BFAG_04903(PF00589)(mitochondrial); mitochondrial
457424.BFAG_03931(PF07971)ER
457424.BFAG_01898(PF03572)ER
457424.BFAG_04583(PF02080)ER
457424.BFAG_04748(PF02709)ER
457424.BFAG_00851(PF02687)(mitochondrial); mitochondrial
457424.BFAG_02743PF17170ER
457424.BFAG_02744PF17170ER
457424.BFAG_04176(PF00754)ER
457424.BFAG_00586(PF02080)ER
457424.BFAG_01229(PF02350)(mitochondrial)
457424.BFAG_02564PF17170ER
457424.BFAG_02561PF17170ER
457424.BFAG_00845(PF02687)mitochondrial
457424.BFAG_00847(PF02687)(mitochondrial); mitochondrial
457424.BFAG_00849(PF02687)mitochondrial
457424.BFAG_02194PF17170ER
457424.BFAG_02284PF17170ER
457424.BFAG_01718(PF00589)(mitochondrial)
457424.BFAG_03570PF01823ER
457424.BFAG_00064(PF07971)ER
457424.BFAG_00459(PF00589)(mitochondrial)
457424.BFAG_00069(PF00754)ER
457424.BFAG_04170(PF03572)ER
457424.BFAG_03488PF17170ER
457424.BFAG_00669(PF02080)ER
457424.BFAG_01069(PF00703)ER
457424.BFAG_04613(PF01120)ER
457424.BFAG_02996PF02357(mitochondrial)
457424.BFAG_01158(PF02350)(mitochondrial)
457424.BFAG_01522PF17170ER
457424.BFAG_01700(PF03118)ER
457424.BFAG_02147PF17170ER
457424.BFAG_03499(PF13905)ER
457424.BFAG_00435(PF00953)ER
457424.BFAG_04115PF17170ER
457424.BFAG_04111PF17170ER
457424.BFAG_03145(PF00754)ER
457424.BFAG_03146(PF00754)ER
457424.BFAG_02961(PF03415)ER
457424.BFAG_02965PF12812ER
457424.BFAG_01094(PF03415)ER
457424.BFAG_04425(PF02838)ER
457424.BFAG_03812(PF02544)ER
457424.BFAG_03816(PF13086)mitochondrial
457424.BFAG_02772(PF05686)mitochondrial; (mitochondrial)
457424.BFAG_02773(PF01531)(ER); (mitochondrial)
457424.BFAG_04388(PF03572)ER
457424.BFAG_04385PF17170ER
457424.BFAG_04383PF17170ER
457424.BFAG_04382PF17170ER
457424.BFAG_04381PF17170ER
457424.BFAG_04706(PF11175)(ER)
457424.BFAG_03956(PF00953)ER
457424.BFAG_03735(PF00953)(ER); ER
457424.BFAG_01763(PF02080)ER
457424.BFAG_00561PF02183ER
457424.BFAG_03058(PF02719)ER; (ER)
457424.BFAG_00095(PF07971)ER
457424.BFAG_00092(PF07971)ER
457424.BFAG_00091(PF07971)ER
457424.BFAG_02948PF17170ER
457424.BFAG_02945PF17170ER
457424.BFAG_03940PF17170ER
457424.BFAG_03941(PF00754)ER
457424.BFAG_01169(PF00589)(mitochondrial)
457424.BFAG_04400PF17170ER
457424.BFAG_01162(PF00953)ER
457424.BFAG_04405PF17039ER
457424.BFAG_02836PF17170ER
457424.BFAG_00974PF01823ER
457424.BFAG_03535PF17170mitochondrial
457424.BFAG_03537(PF01120)ER
457424.BFAG_03531(PF07971)ER
457424.BFAG_03266(PF08124)(ER)
457424.BFAG_04275PF17170ER
457424.BFAG_02485(PF14771)ER
457424.BFAG_02825PF17170ER
457424.BFAG_01024PF17170ER
457424.BFAG_04506(PF00589)(mitochondrial)
457424.BFAG_01291(PF00589)(mitochondrial); mitochondrial
457424.BFAG_00369(PF12437)(mitochondrial)
457424.BFAG_00367(PF02838) (PF13287) (PF00728)
457424.BFAG_02212(PF12437)mitochondrial; (mitochondrial)
457424.BFAG_04087(PF16401)ER
457424.BFAG_04267(PF11175)ER
457424.BFAG_03851(PF00754)(ER)
457424.BFAG_02116(PF02350)(mitochondrial)
457424.BFAG_02111(PF00953)ER
457424.BFAG_04842PF13155(ER)
457424.BFAG_04219(PF13905)ER
457424.BFAG_02938PF17170mitochondrial
457424.BFAG_03862(PF01120)ER
457424.BFAG_03509PF17170ER
457424.BFAG_03090(PF00589)mitochondrial; (mitochondrial)
457424.BFAG_00233PF17170(mitochondrial)
457424.BFAG_04682(PF03572)ER
457424.BFAG_04534(PF00589)mitochondrial
457424.BFAG_01249(PF03572)ER
457424.BFAG_02681(PF07944)ER
457424.BFAG_02682(PF07944)ER
457424.BFAG_02683(PF00703) (PF02836) (PF02837)
457424.BFAG_04059PF17170ER
457424.BFAG_04051PF17170ER
457424.BFAG_02310(PF00589)(mitochondrial); mitochondrial
457424.BFAG_00222(PF01120)ER
457424.BFAG_00857(PF02687)mitochondrial
457424.BFAG_02862(PF16401)(ER)
457424.BFAG_03798(PF09471)ER
457424.BFAG_02670PF01637(ER); ER
457424.BFAG_04045PF17170ER
457424.BFAG_04047PF17170ER
457424.BFAG_01927(PF13905)ER
457424.BFAG_04228PF03432(mitochondrial)
457424.BFAG_01073(PF07971)ER
457424.BFAG_02668(PF03663)ER
457424.BFAG_02665(PF07971)ER
457424.BFAG_03427(PF00216)(mitochondrial)
457424.BFAG_02248(PF02080)ER
457424.BFAG_03206PF17170(mitochondrial); mitochondrial
457424.BFAG_01691PF01637(mitochondrial)
457424.BFAG_04777PF13155 PF01807
457424.BFAG_03746(PF00216)(mitochondrial)
457424.BFAG_04168(PF00754) (PF07944)
457424.BFAG_04341(PF07837) (PF02971)
457424.BFAG_02985(PF00589)(plastid)
457424.BFAG_00933(PF02687) (PF12704)
457424.BFAG_02999(PF04422) PF04432
457424.BFAG_03620PF03432(ER)
457424.BFAG_03967(PF04422) PF04432
457424.BFAG_01389PF13155 PF01807
457424.BFAG_04899PF13155 PF01807
457424.BFAG_03996PF13155 PF01807
457424.BFAG_04888(PF00589)(mitochondrial)
457424.BFAG_02921(PF14684) (PF03572)
457424.BFAG_00779PF13155 PF01807
457424.BFAG_00205(PF02080)(mitochondrial)
457424.BFAG_02057(PF00589)(mitochondrial)
457424.BFAG_03475(PF13415)(ER)
457424.BFAG_01016(PF00589)(mitochondrial)
457424.BFAG_02474(PF02687) (PF12704)
457424.BFAG_02473(PF02687) (PF12704)
457424.BFAG_00685(PF00589)(mitochondrial)
457424.BFAG_01800(PF05970) PF02689
457424.BFAG_00320(PF05970) PF02689
457424.BFAG_04226PF13155 PF01807
457424.BFAG_02061PF03727 PF00349
457424.BFAG_04030(PF02350)(mitochondrial)
457424.BFAG_04149(PF02709)
457424.BFAG_04562(PF13481)
457424.BFAG_01041PF02357
457424.BFAG_04567(PF07693)
457424.BFAG_04814(PF00589)
457424.BFAG_00874PF02357
457424.BFAG_00876PF04432
457424.BFAG_00902(PF00216)
457424.BFAG_00651(PF02719)
457424.BFAG_02342(PF02837)
457424.BFAG_04150PF17170
457424.BFAG_04795PF03432
457424.BFAG_04797(PF07693)
457424.BFAG_03108(PF00589)
457424.BFAG_03109(PF00589)
457424.BFAG_04571(PF00589)
457424.BFAG_01058(PF16757)
457424.BFAG_02140PF02357
457424.BFAG_03926PF01637
457424.BFAG_00649PF02357
457424.BFAG_01735PF13155
457424.BFAG_01736(PF13481)
457424.BFAG_03590PF01637
457424.BFAG_00004(PF16314)
457424.BFAG_00463PF13155
457424.BFAG_01993(PF00216)
457424.BFAG_01305PF03432
457424.BFAG_01190(PF00216)
457424.BFAG_02512(PF00589)
457424.BFAG_02515(PF13481)
457424.BFAG_00465PF03432
457424.BFAG_02293(PF05693)
457424.BFAG_02362(PF13481)
457424.BFAG_03582PF13155
457424.BFAG_00295(PF03572)
457424.BFAG_03588(PF13151)
457424.BFAG_01853(PF00216)
457424.BFAG_04356(PF00589)
457424.BFAG_03011PF04432
457424.BFAG_00930(PF08124)
457424.BFAG_01716PF03432
457424.BFAG_01711(PF00589)
457424.BFAG_03577(PF00216)
457424.BFAG_00065(PF13415)
457424.BFAG_02375(PF00589)
457424.BFAG_04103(PF00216)
457424.BFAG_01149PF02357
457424.BFAG_04290PF02357
457424.BFAG_02991(PF00216)
457424.BFAG_01155(PF05704)
457424.BFAG_01157(PF02719)
457424.BFAG_01412(PF00589)
457424.BFAG_02142PF07959
457424.BFAG_04605(PF00589)
457424.BFAG_04286(PF00589)
457424.BFAG_01091(PF00589)
457424.BFAG_00606(PF00754)
457424.BFAG_01604(PF00216)
457424.BFAG_02394(PF00216)
457424.BFAG_00420PF02357
457424.BFAG_04129(PF00216)
457424.BFAG_04384PF17170
457424.BFAG_03954(PF00216)
457424.BFAG_04415(PF00589)
457424.BFAG_01170(PF00589)
457424.BFAG_03737PF02357
457424.BFAG_02705(PF00953)
457424.BFAG_04390PF17170
457424.BFAG_04396(PF02709)
457424.BFAG_04575PF01637
457424.BFAG_01052PF01637
457424.BFAG_01168(PF00589)not used
457424.BFAG_01570(PF00589)
457424.BFAG_01371PF03432
457424.BFAG_01281(PF13481)
457424.BFAG_00138PF02357
457424.BFAG_01116(PF13905)
457424.BFAG_00629(PF03054)
457424.BFAG_02133(PF01531)
457424.BFAG_02130(PF00589)
457424.BFAG_00156(PF03031)
457424.BFAG_00710(PF06250)
457424.BFAG_04874PF03432
457424.BFAG_04879PF03432
457424.BFAG_03269(PF02350)
457424.BFAG_02480(PF05192)
457424.BFAG_02823(PF03054)
457424.BFAG_02033(PF02080)
457424.BFAG_01636PF13155
457424.BFAG_00162(PF00216)
457424.BFAG_04640(PF05192)
457424.BFAG_04869PF03432
457424.BFAG_03274PF02357
457424.BFAG_00214PF05691
457424.BFAG_02850(PF16011)
457424.BFAG_03980PF02357
457424.BFAG_02117(PF02719)
457424.BFAG_03466(PF06250)
457424.BFAG_01138(PF02080)
457424.BFAG_03868(PF02080)
457424.BFAG_03641(PF13086)
457424.BFAG_02699(PF00216)
457424.BFAG_01656(PF07693)
457424.BFAG_00694(PF03118)
457424.BFAG_00749PF13155
457424.BFAG_00748PF13155
457424.BFAG_04064(PF00589)
457424.BFAG_00527PF02357
457424.BFAG_02300(PF01991)
457424.BFAG_00235(PF01715)
457424.BFAG_04444(PF03054)
457424.BFAG_04334(PF03118)
457424.BFAG_04338(PF05192)
457424.BFAG_01336(PF00589)
457424.BFAG_03899(PF13905)
457424.BFAG_00481(PF00754)
457424.BFAG_02684(PF03663)
457424.BFAG_00529(PF02080)
457424.BFAG_01461(PF00589)
457424.BFAG_01465(PF00589)
457424.BFAG_00688(PF13481)
457424.BFAG_00689PF13155
457424.BFAG_00352(PF01715)
457424.BFAG_01992(PF00216)
457424.BFAG_02315(PF00589)
457424.BFAG_00224(PF13086)
457424.BFAG_04233(PF06250)
457424.BFAG_04234(PF00589)
457424.BFAG_03135PF01637
457424.BFAG_02677(PF00754)
457424.BFAG_04827PF03432
457424.BFAG_04225(PF13481)
457424.BFAG_02127(PF13481)
457424.BFAG_02067(PF00216)
457424.BFAG_02669(PF09471)
457424.BFAG_00799PF03432

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.375 (3/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================