Metamenu

Effective results for Rhodobacteraceae bacterium KLH11 (eggnog40)

Summary

Number of putative secreted proteins: 109
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 109 proteins (15 high, 94 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
467661.RKLH11_4280(PF05225) (PF00665)mitochondrial; (mitochondrial)
467661.RKLH11_3741(PF16350) (PF08669)ER; (ER)
467661.RKLH11_2907(PF16350) (PF08669)ER
467661.RKLH11_549(PF13704)(ER)
467661.RKLH11_3846(PF13332)mitochondrial
467661.RKLH11_3924PF13565 (PF00665)(plastid)
467661.RKLH11_3534(PF16350) (PF08669)(mitochondrial)
467661.RKLH11_3503(PF03050)mitochondrial
467661.RKLH11_2271(PF13704)mitochondrial; (mitochondrial)
467661.RKLH11_4098(PF13332)(plastid)
467661.RKLH11_3281PF13565 (PF00665)
467661.RKLH11_1061(PF16350) (PF08669)
467661.RKLH11_1737(PF08669)(plastid)
467661.RKLH11_4056PF13565 (PF00665)
467661.RKLH11_3469PF13565 (PF00665)
467661.RKLH11_3256(PF05034) (PF07476)
467661.RKLH11_1677(PF16350) (PF08669)
467661.RKLH11_4171(PF03050)(ER)
467661.RKLH11_4336(PF00665)(mitochondrial)
467661.RKLH11_3238PF13565 (PF00665)
467661.RKLH11_249(PF16350) (PF08669)
467661.RKLH11_4256(PF13332)(plastid)
467661.RKLH11_1191PF13565 (PF00665)
467661.RKLH11_308(PF08843)(mitochondrial)
467661.RKLH11_75PF13565 (PF00665)
467661.RKLH11_3631PF13565 (PF00665)
467661.RKLH11_2914(PF08669)(mitochondrial)
467661.RKLH11_1366PF13565 (PF00665)
467661.RKLH11_4181PF13565 (PF00665)
467661.RKLH11_1124PF13565 (PF00665)
467661.RKLH11_950PF13565 (PF00665)
467661.RKLH11_4091(PF08843)
467661.RKLH11_721(PF14031)
467661.RKLH11_2399(PF09585)
467661.RKLH11_4151(PF00665)
467661.RKLH11_18(PF11927)
467661.RKLH11_12(PF01527)
467661.RKLH11_3273(PF14031)
467661.RKLH11_1381(PF01527)
467661.RKLH11_1732(PF13704)
467661.RKLH11_3639(PF02371)
467661.RKLH11_3643(PF08669)
467661.RKLH11_3730(PF16155)
467661.RKLH11_2031(PF03050)
467661.RKLH11_1675(PF05637)
467661.RKLH11_3817(PF01527)
467661.RKLH11_3812(PF11927)
467661.RKLH11_1072(PF09585)not used
467661.RKLH11_1719(PF13704)
467661.RKLH11_3920(PF01527)
467661.RKLH11_344PF13565
467661.RKLH11_3933(PF14031)
467661.RKLH11_3937(PF13468)
467661.RKLH11_4113(PF00665)
467661.RKLH11_1983(PF09511)
467661.RKLH11_4022(PF03050)
467661.RKLH11_4023(PF08843)
467661.RKLH11_4246(PF02371)
467661.RKLH11_4244(PF00665)
467661.RKLH11_752(PF13468)
467661.RKLH11_110(PF01527)
467661.RKLH11_3566(PF01527)
467661.RKLH11_2747(PF01527)
467661.RKLH11_3830(PF08669)
467661.RKLH11_4321(PF02371)
467661.RKLH11_2778(PF08669)
467661.RKLH11_3917(PF14031)
467661.RKLH11_4134(PF01527)
467661.RKLH11_4136(PF02371)
467661.RKLH11_4004(PF00665)
467661.RKLH11_4264(PF08843)
467661.RKLH11_3368(PF01527)
467661.RKLH11_2302PF11781
467661.RKLH11_2431(PF02371)
467661.RKLH11_1443(PF01527)
467661.RKLH11_4101(PF00665)
467661.RKLH11_4278(PF03050)
467661.RKLH11_4271(PF02371)
467661.RKLH11_3158(PF04862)
467661.RKLH11_4066(PF00665)
467661.RKLH11_4061(PF03050)
467661.RKLH11_1835(PF03050)not used
467661.RKLH11_2841(PF01527)
467661.RKLH11_3308(PF02371)
467661.RKLH11_3410(PF01527)
467661.RKLH11_1308(PF02485)
467661.RKLH11_514(PF03050)
467661.RKLH11_4077(PF01527)
467661.RKLH11_1953(PF01527)
467661.RKLH11_4168(PF08843)
467661.RKLH11_3407(PF02371)
467661.RKLH11_3886(PF13468)
467661.RKLH11_443(PF02371)
467661.RKLH11_3187(PF08843)
467661.RKLH11_3183(PF03050)
467661.RKLH11_2695(PF13704)
467661.RKLH11_4184(PF01527)not used
467661.RKLH11_1970(PF09458)
467661.RKLH11_4235(PF03050)
467661.RKLH11_3199(PF01527)
467661.RKLH11_2113(PF02371)
467661.RKLH11_987PF14008
467661.RKLH11_3602(PF08669)
467661.RKLH11_3998(PF02371)
467661.RKLH11_4082(PF00665)
467661.RKLH11_4083(PF03050)
467661.RKLH11_426(PF01527)
467661.RKLH11_6(PF08669)
467661.RKLH11_2492(PF02485)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================