Effective results for Thermobispora bispora DSM 43833 (eggnog40)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 35 proteins (1 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
469371.Tbis_0352(PF00553)mitochondrial; (mitochondrial)
469371.Tbis_2862(PF00553)ER
469371.Tbis_2664(PF01406)(mitochondrial)
469371.Tbis_2656(PF00553)mitochondrial
469371.Tbis_2830(PF00553)mitochondrial; ER
469371.Tbis_1040(PF00553)ER
469371.Tbis_2139(PF00553)ER
469371.Tbis_1932(PF01406)mitochondrial
469371.Tbis_2022(PF00553)mitochondrial
469371.Tbis_0925(PF00553)ER
469371.Tbis_1559(PF00553)mitochondrial; (mitochondrial)
469371.Tbis_0780(PF00553)ER
469371.Tbis_1219(PF00553)ER
469371.Tbis_2633(PF00553)ER
469371.Tbis_2444(PF06241)mitochondrial
469371.Tbis_0388(PF00553)ER
469371.Tbis_2616(PF13580)mitochondrial
469371.Tbis_3491(PF02182)
469371.Tbis_2640(PF13580)
469371.Tbis_0430(PF06032)
469371.Tbis_0423(PF01951)
469371.Tbis_0429(PF06032)
469371.Tbis_0428(PF06032)
469371.Tbis_2138(PF00553)
469371.Tbis_2913(PF00102)
469371.Tbis_3171(PF01406)
469371.Tbis_0506(PF01406)
469371.Tbis_2774(PF00553)
469371.Tbis_2950(PF06032)
469371.Tbis_0834(PF01951)
469371.Tbis_1540(PF11977)
469371.Tbis_3233(PF13580)
469371.Tbis_1579PF14447
469371.Tbis_1663(PF13580)
469371.Tbis_2617(PF13580)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================