Effective results for Clostridium sticklandii DSM 519 (eggnog40)

Summary

Number of putative secreted proteins: 47
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 47 proteins (4 high, 43 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
499177.CLOST_1397				(PF14697)	ER
499177.CLOST_0705				PF07343	ER
499177.CLOST_0152				(PF00163)	(mitochondrial)
499177.CLOST_2021				(PF14697)	(mitochondrial)
499177.CLOST_0834				PF04117	ER
499177.CLOST_0486				(PF00871)	(mitochondrial)
499177.CLOST_2171				(PF00163)	(mitochondrial)
499177.CLOST_1282				(PF07837) (PF02971)
499177.CLOST_1913				(PF17147) (PF01855)
499177.CLOST_0205				(PF01855)	(mitochondrial)
499177.CLOST_0755				(PF17147) (PF01855)
499177.CLOST_0757				(PF00871)	(mitochondrial)
499177.CLOST_1473				(PF17147) (PF01855)
499177.CLOST_0491				(PF17147) (PF01855)
499177.CLOST_1157				(PF17147) (PF01855)
499177.CLOST_1779				(PF01880)
499177.CLOST_2153				(PF14512)
499177.CLOST_0554				(PF14512)
499177.CLOST_0098				(PF12392)
499177.CLOST_1024				(PF14697)
499177.CLOST_1283				(PF04961)
499177.CLOST_1584				(PF16199)
499177.CLOST_2450				(PF01880)
499177.CLOST_1354				(PF00871)
499177.CLOST_0208				(PF00871)
499177.CLOST_0833				(PF01795)
499177.CLOST_1486				PF00564
499177.CLOST_1664				(PF16199)
499177.CLOST_2461				(PF14512)
499177.CLOST_2317				(PF01991)
499177.CLOST_1902				(PF01795)
499177.CLOST_1926				(PF01855)
499177.CLOST_0309				(PF13020)
499177.CLOST_0018				(PF02938)
499177.CLOST_1300				(PF02938)
499177.CLOST_0908				(PF14697)
499177.CLOST_1163				(PF04961)
499177.CLOST_2432				PF04414
499177.CLOST_2502				(PF07934)
499177.CLOST_0916				(PF16199)
499177.CLOST_0914				(PF12640)
499177.CLOST_0488				(PF00871)
499177.CLOST_2515				(PF13020)
499177.CLOST_0754				(PF14697)
499177.CLOST_1085				(PF12646)
499177.CLOST_0283				(PF07934)
499177.CLOST_1145				(PF12392)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================