Effective results for Meiothermus ruber DSM 1279 (eggnog40)

Summary

Number of putative secreted proteins: 14
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 14 proteins (4 high, 10 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
504728.Mrub_0370(PF07250)ER
504728.Mrub_1368(PF10162)ER
504728.Mrub_0958(PF01991)
504728.Mrub_1085(PF03630)
504728.Mrub_0405(PF02475)
504728.Mrub_2483PF12862
504728.Mrub_2264(PF04930)
504728.Mrub_1173PF04098
504728.Mrub_2674(PF01409)
504728.Mrub_2673(PF01409)
504728.Mrub_0576PF04098
504728.Mrub_1713(PF00025)
504728.Mrub_1382PF12862
504728.Mrub_0948(PF09419)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================