Effective results for Capnocytophaga ochracea DSM 7271 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 29 proteins (3 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
521097.Coch_1337(PF13306)ER
521097.Coch_0063(PF13290)ER
521097.Coch_0500(PF06414)(mitochondrial)
521097.Coch_0732PF03083ER
521097.Coch_1923PF03083(ER)
521097.Coch_1524(PF03162)ER
521097.Coch_2160(PF13290)ER
521097.Coch_0940(PF13306)ER
521097.Coch_0947(PF13306)ER
521097.Coch_0946(PF13306)ER
521097.Coch_0948(PF13306)ER
521097.Coch_1443(PF13306)ER
521097.Coch_0419(PF13306)ER
521097.Coch_0300(PF14771)ER
521097.Coch_0772PF03083ER
521097.Coch_0357(PF13583)ER
521097.Coch_0358(PF13583)ER
521097.Coch_0359(PF13583)ER
521097.Coch_0168(PF13306)ER
521097.Coch_1350(PF13290)ER
521097.Coch_1036(PF13306)ER
521097.Coch_0033(PF02494)ER
521097.Coch_1586(PF13583)(plastid)
521097.Coch_1865(PF13306)(mitochondrial)
521097.Coch_1336(PF02494)
521097.Coch_1525(PF13306)
521097.Coch_1885(PF08357)
521097.Coch_1285(PF05693)
521097.Coch_0360(PF06414)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================