Effective results for Sphingobacterium spiritivorum ATCC 33861 (eggnog40)

Summary

Number of putative secreted proteins: 224
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 39 eukaryotic-like domains, contained in 224 proteins (9 high, 215 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
525373.HMPREF0766_11379(PF00728) (PF02838)ER
525373.HMPREF0766_10178(PF11958) PF16871ER
525373.HMPREF0766_11467(PF08124) (PF02884)ER
525373.HMPREF0766_11252(PF00728) (PF02838)ER
525373.HMPREF0766_13696(PF09112) (PF09113)ER
525373.HMPREF0766_10556(PF00728) (PF02838)ER; (ER)
525373.HMPREF0766_13025(PF00728) (PF02838)ER
525373.HMPREF0766_13329(PF08124) (PF02884)ER
525373.HMPREF0766_14203(PF00728) (PF02838)ER
525373.HMPREF0766_11004(PF00728) (PF02838)ER
525373.HMPREF0766_14228(PF07971) (PF14683)ER
525373.HMPREF0766_13045(PF12708)ER
525373.HMPREF0766_13604(PF07715)ER
525373.HMPREF0766_13603(PF00388)ER
525373.HMPREF0766_13608(PF07715)ER
525373.HMPREF0766_13262(PF07715)(ER)
525373.HMPREF0766_13466(PF07715)ER
525373.HMPREF0766_13865(PF03415)ER
525373.HMPREF0766_11632(PF07715)ER
525373.HMPREF0766_10724(PF07715)ER
525373.HMPREF0766_11752(PF07715)ER
525373.HMPREF0766_10274(PF07715)ER
525373.HMPREF0766_13675(PF07715)ER
525373.HMPREF0766_11655(PF01120)ER
525373.HMPREF0766_12037(PF07715)ER
525373.HMPREF0766_11797(PF06439)ER
525373.HMPREF0766_11136(PF07715)(mitochondrial)
525373.HMPREF0766_13923(PF07715)ER
525373.HMPREF0766_11626(PF06439)ER
525373.HMPREF0766_11628(PF13905)ER
525373.HMPREF0766_10286(PF07715)(ER); plastid
525373.HMPREF0766_10285(PF01120)ER
525373.HMPREF0766_10282(PF01120)ER
525373.HMPREF0766_10280(PF07715)ER
525373.HMPREF0766_10047(PF07715)ER
525373.HMPREF0766_12755(PF07715)ER
525373.HMPREF0766_13934(PF07971)ER
525373.HMPREF0766_10677(PF07715)ER
525373.HMPREF0766_10674(PF04450)ER
525373.HMPREF0766_10675(PF07971)ER
525373.HMPREF0766_10673(PF07971)ER
525373.HMPREF0766_10685(PF07715)ER
525373.HMPREF0766_14360(PF07715)ER
525373.HMPREF0766_13128(PF07715)ER
525373.HMPREF0766_13010(PF07715)(mitochondrial)
525373.HMPREF0766_13839PF13402ER
525373.HMPREF0766_12523PF04733ER
525373.HMPREF0766_12745(PF07715)ER
525373.HMPREF0766_13903(PF07715)ER
525373.HMPREF0766_11643(PF07715)(mitochondrial); mitochondrial
525373.HMPREF0766_13441(PF07715)mitochondrial
525373.HMPREF0766_14020(PF06439)ER
525373.HMPREF0766_12992(PF07715)ER
525373.HMPREF0766_11463(PF07470)ER
525373.HMPREF0766_11707PF16871ER
525373.HMPREF0766_13918(PF07715)mitochondrial
525373.HMPREF0766_11851(PF13415)ER
525373.HMPREF0766_10611(PF13905)ER
525373.HMPREF0766_10612(PF06439)ER
525373.HMPREF0766_10617PF13402(mitochondrial)
525373.HMPREF0766_10856(PF07715)ER
525373.HMPREF0766_11183(PF07715)ER
525373.HMPREF0766_11181(PF02469)ER
525373.HMPREF0766_11180(PF02469)ER
525373.HMPREF0766_11187(PF07470)ER
525373.HMPREF0766_11184(PF02469)ER
525373.HMPREF0766_10106(PF01120)ER
525373.HMPREF0766_10580(PF07715)ER
525373.HMPREF0766_12980(PF07715)ER
525373.HMPREF0766_11691(PF07470)ER
525373.HMPREF0766_14347(PF01120)ER
525373.HMPREF0766_13362(PF07715)ER
525373.HMPREF0766_11204(PF07715)ER
525373.HMPREF0766_10626(PF07715)ER
525373.HMPREF0766_10622(PF07715)ER
525373.HMPREF0766_10821(PF07715)ER
525373.HMPREF0766_11192(PF12708)ER
525373.HMPREF0766_11193(PF12708)(ER)
525373.HMPREF0766_10312(PF01120)ER
525373.HMPREF0766_12379(PF14771)ER
525373.HMPREF0766_13752(PF01120)ER
525373.HMPREF0766_13682(PF07715)ER
525373.HMPREF0766_12792(PF06439)ER
525373.HMPREF0766_12791(PF07715)ER
525373.HMPREF0766_13979(PF01120)ER
525373.HMPREF0766_11058(PF07715)ER
525373.HMPREF0766_11832(PF07715)ER
525373.HMPREF0766_10498(PF07715)ER
525373.HMPREF0766_13169(PF07715)ER
525373.HMPREF0766_12366(PF07715)ER
525373.HMPREF0766_12367(PF06439)ER
525373.HMPREF0766_13413(PF07715)ER
525373.HMPREF0766_13419(PF07715)ER
525373.HMPREF0766_13418PF13402ER
525373.HMPREF0766_12095PF13402ER
525373.HMPREF0766_12098(PF02469)ER
525373.HMPREF0766_11822(PF07715)ER
525373.HMPREF0766_11826(PF07715)ER
525373.HMPREF0766_11229PF13402ER
525373.HMPREF0766_10806(PF07715)ER
525373.HMPREF0766_10155(PF07715)ER
525373.HMPREF0766_12952(PF06439)ER
525373.HMPREF0766_14075(PF07715)ER
525373.HMPREF0766_14319(PF07715)ER
525373.HMPREF0766_10205(PF05686)mitochondrial
525373.HMPREF0766_10203(PF13905)ER
525373.HMPREF0766_13573(PF13905)ER
525373.HMPREF0766_13794(PF07715)ER
525373.HMPREF0766_11145(PF07715)ER
525373.HMPREF0766_11963(PF13905)ER
525373.HMPREF0766_11965(PF07715)(ER)
525373.HMPREF0766_11814(PF07715)ER
525373.HMPREF0766_11819(PF07715)ER
525373.HMPREF0766_11363(PF07715)ER
525373.HMPREF0766_11494(PF13650)ER
525373.HMPREF0766_10140(PF07715)mitochondrial
525373.HMPREF0766_13541(PF07715)ER
525373.HMPREF0766_13434(PF07715)ER
525373.HMPREF0766_12052(PF07715)ER
525373.HMPREF0766_12936(PF07715)ER
525373.HMPREF0766_14058(PF07715)(mitochondrial)
525373.HMPREF0766_14200(PF07715)(ER)
525373.HMPREF0766_14204(PF00728)ER
525373.HMPREF0766_13558(PF13650)ER
525373.HMPREF0766_11013(PF07715)(mitochondrial); (plastid)
525373.HMPREF0766_12595(PF07715)ER
525373.HMPREF0766_11165(PF07715)ER
525373.HMPREF0766_10166(PF13905)(ER)
525373.HMPREF0766_10165(PF03415)ER
525373.HMPREF0766_11322(PF07715)mitochondrial
525373.HMPREF0766_10506(PF07715)ER
525373.HMPREF0766_10695(PF12708)ER
525373.HMPREF0766_14210(PF07715)ER
525373.HMPREF0766_12102(PF02469)ER
525373.HMPREF0766_12100(PF07715)ER
525373.HMPREF0766_12104(PF07715)ER
525373.HMPREF0766_12211(PF06439)ER
525373.HMPREF0766_13855(PF13650)ER
525373.HMPREF0766_11177(PF07715)ER
525373.HMPREF0766_11179(PF07715)ER
525373.HMPREF0766_12918(PF07715)ER
525373.HMPREF0766_12915(PF07715)ER
525373.HMPREF0766_14185(PF07715)ER
525373.HMPREF0766_14189(PF07715)ER
525373.HMPREF0766_11590(PF07715)(mitochondrial)
525373.HMPREF0766_11758(PF07715)ER
525373.HMPREF0766_11756(PF07715)ER
525373.HMPREF0766_13629(PF07715)(mitochondrial)
525373.HMPREF0766_12261(PF07715)ER
525373.HMPREF0766_12005(PF13650)ER
525373.HMPREF0766_13840(PF07971)ER
525373.HMPREF0766_14084(PF07715)ER
525373.HMPREF0766_10520(PF07715)(mitochondrial); plastid
525373.HMPREF0766_14230(PF07715)ER
525373.HMPREF0766_13500(PF07715)ER
525373.HMPREF0766_12674(PF07715)ER
525373.HMPREF0766_13476(PF07715)(mitochondrial)
525373.HMPREF0766_12273(PF07470)ER
525373.HMPREF0766_12274(PF12708)ER
525373.HMPREF0766_13878PF13402ER
525373.HMPREF0766_12703(PF07715)ER
525373.HMPREF0766_14181(PF07715)ER
525373.HMPREF0766_10391(PF07715)ER
525373.HMPREF0766_10462(PF07470)ER
525373.HMPREF0766_10467(PF07715)ER
525373.HMPREF0766_10464(PF07470)ER
525373.HMPREF0766_10266(PF07971)ER
525373.HMPREF0766_13047(PF07715)(ER)
525373.HMPREF0766_10277(PF07715)plastid
525373.HMPREF0766_13018(PF07715)(mitochondrial)
525373.HMPREF0766_10105(PF00728) (PF02838)
525373.HMPREF0766_12611(PF07715)plastid
525373.HMPREF0766_12161(PF06439)(ER)
525373.HMPREF0766_13416(PF07715)(mitochondrial)
525373.HMPREF0766_11317(PF00728) (PF02838)
525373.HMPREF0766_11708(PF11958)
525373.HMPREF0766_11694(PF07715)
525373.HMPREF0766_13677(PF02469)
525373.HMPREF0766_12656(PF07715)
525373.HMPREF0766_12729(PF07715)
525373.HMPREF0766_10779(PF13376)
525373.HMPREF0766_14378(PF01715)
525373.HMPREF0766_13391(PF07715)
525373.HMPREF0766_10871(PF07715)
525373.HMPREF0766_14361(PF07715)
525373.HMPREF0766_13659(PF07715)
525373.HMPREF0766_13017(PF07715)
525373.HMPREF0766_11507(PF13376)
525373.HMPREF0766_14100(PF02182)
525373.HMPREF0766_11466(PF07715)
525373.HMPREF0766_12817(PF13650)
525373.HMPREF0766_13002(PF07715)
525373.HMPREF0766_12355(PF02689)
525373.HMPREF0766_12179(PF16314)
525373.HMPREF0766_13913(PF07715)
525373.HMPREF0766_10855(PF13376)
525373.HMPREF0766_14002(PF16011)
525373.HMPREF0766_12343(PF07653)
525373.HMPREF0766_11066(PF15588)
525373.HMPREF0766_10620(PF02469)
525373.HMPREF0766_11332(PF07715)
525373.HMPREF0766_10009(PF01120)
525373.HMPREF0766_11949(PF12721)not used
525373.HMPREF0766_10308(PF07715)
525373.HMPREF0766_14316(PF07971)
525373.HMPREF0766_14312(PF13376)
525373.HMPREF0766_12223(PF00454)
525373.HMPREF0766_12319(PF13906)
525373.HMPREF0766_11035(PF05192)
525373.HMPREF0766_12721(PF00388)
525373.HMPREF0766_13200(PF07715)
525373.HMPREF0766_11157(PF07715)
525373.HMPREF0766_11489(PF07715)
525373.HMPREF0766_10228(PF05192)
525373.HMPREF0766_13159(PF07715)
525373.HMPREF0766_14428(PF13376)
525373.HMPREF0766_12062(PF13905)
525373.HMPREF0766_14198(PF02469)
525373.HMPREF0766_13454(PF05192)
525373.HMPREF0766_11174(PF07470)
525373.HMPREF0766_12711(PF07715)
525373.HMPREF0766_10529(PF07715)
525373.HMPREF0766_11114(PF01715)
525373.HMPREF0766_12495(PF15610)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================