Metamenu

Effective results for Gordonia bronchialis DSM 43247 (eggnog40)

Summary

Number of putative secreted proteins: 146
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 146 proteins (31 high, 115 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
526226.Gbro_0204(PF13450)(ER)
526226.Gbro_0759(PF03583)mitochondrial
526226.Gbro_1520(PF03583)ER
526226.Gbro_2631(PF05140)mitochondrial
526226.Gbro_3377(PF09995)(mitochondrial)
526226.Gbro_1307(PF13565)mitochondrial; (mitochondrial)
526226.Gbro_0760(PF03583)mitochondrial
526226.Gbro_4695(PF13565)mitochondrial; (mitochondrial)
526226.Gbro_2661(PF05140)mitochondrial
526226.Gbro_2664(PF07884)ER
526226.Gbro_0210(PF08310)mitochondrial
526226.Gbro_0186(PF03583)(mitochondrial)
526226.Gbro_0733(PF03583)ER
526226.Gbro_0814(PF03583)ER
526226.Gbro_2002(PF13810)ER
526226.Gbro_2627(PF07884)ER
526226.Gbro_0897(PF00665) PF13276(mitochondrial)
526226.Gbro_2521(PF08326)(mitochondrial)
526226.Gbro_2524(PF08310)ER; (ER)
526226.Gbro_4575(PF13810)mitochondrial; ER
526226.Gbro_4414(PF13810)ER
526226.Gbro_4380(PF13565)mitochondrial; (mitochondrial)
526226.Gbro_0264(PF03583)ER
526226.Gbro_1098(PF09995)mitochondrial
526226.Gbro_4284(PF13565)mitochondrial; (mitochondrial)
526226.Gbro_1063(PF03583)ER
526226.Gbro_0623(PF13565)mitochondrial; (mitochondrial)
526226.Gbro_0819(PF00665) PF13276
526226.Gbro_2169(PF00665) PF13276
526226.Gbro_4130(PF13450)(ER)
526226.Gbro_1211(PF09995)(mitochondrial)
526226.Gbro_4663(PF00665) PF13276
526226.Gbro_2709(PF14232) (PF14231)
526226.Gbro_4660(PF00665) PF13276
526226.Gbro_1173(PF00665) PF13276
526226.Gbro_1177(PF00665) PF13276
526226.Gbro_3430(PF00665) PF13276
526226.Gbro_2588(PF00665) PF13276
526226.Gbro_0367(PF00665) PF13276
526226.Gbro_0364(PF00665) PF13276
526226.Gbro_0741(PF00665) PF13276
526226.Gbro_3614(PF00665) PF13276
526226.Gbro_4235(PF00665) PF13276
526226.Gbro_2801(PF00665) PF13276
526226.Gbro_0380(PF00665) PF13276
526226.Gbro_4732(PF00665) PF13276
526226.Gbro_2658(PF00665) PF13276
526226.Gbro_4080(PF00665) PF13276
526226.Gbro_2811(PF00665) PF13276
526226.Gbro_2003(PF17048)(ER)
526226.Gbro_4717(PF00665)(plastid)
526226.Gbro_4711PF13276(mitochondrial)
526226.Gbro_4701(PF00665) PF13276
526226.Gbro_1739(PF00665) PF13276
526226.Gbro_0268(PF13450)plastid
526226.Gbro_0288PF10914(plastid)
526226.Gbro_4774(PF13450)(mitochondrial)
526226.Gbro_1895(PF00665) PF13276
526226.Gbro_3256(PF14232) (PF14231)
526226.Gbro_2615(PF00665) PF13276
526226.Gbro_1501(PF00665) PF13276
526226.Gbro_1404(PF00665) PF13276
526226.Gbro_0737(PF00665) PF13276
526226.Gbro_4622(PF00665) PF13276
526226.Gbro_1994(PF08354)
526226.Gbro_4811(PF11927)
526226.Gbro_0806(PF13810)
526226.Gbro_4289(PF13450)
526226.Gbro_3918(PF03405)
526226.Gbro_4252(PF00665)
526226.Gbro_2880(PF02732)
526226.Gbro_0818(PF01527)
526226.Gbro_2168(PF01527)
526226.Gbro_1212(PF09995)
526226.Gbro_1038(PF05140)
526226.Gbro_4269(PF01025)
526226.Gbro_1849(PF13565)
526226.Gbro_4659(PF01527)
526226.Gbro_3796(PF09995)
526226.Gbro_0795(PF00665)
526226.Gbro_1946(PF03405)
526226.Gbro_4848(PF09995)
526226.Gbro_2141(PF03405)
526226.Gbro_1740(PF01527)
526226.Gbro_1266(PF09995)
526226.Gbro_2457(PF08704)
526226.Gbro_1496(PF09995)
526226.Gbro_1497(PF09995)
526226.Gbro_2921(PF13565)
526226.Gbro_2210(PF13565)
526226.Gbro_4664(PF01527)
526226.Gbro_2046(PF03583)
526226.Gbro_1005PF08213not used
526226.Gbro_1310(PF00665)
526226.Gbro_1178(PF01527)
526226.Gbro_1174(PF01527)
526226.Gbro_2668(PF01527)
526226.Gbro_0197(PF08310)
526226.Gbro_3431(PF01527)
526226.Gbro_2694(PF08310)
526226.Gbro_2587(PF01527)
526226.Gbro_2586(PF01527)
526226.Gbro_3613(PF01527)
526226.Gbro_0366(PF01527)
526226.Gbro_0365(PF01527)
526226.Gbro_2476(PF08704)
526226.Gbro_0359(PF00665)
526226.Gbro_4189(PF09995)
526226.Gbro_0739(PF01527)
526226.Gbro_0736(PF00665)
526226.Gbro_4522(PF09995)
526226.Gbro_2800(PF01527)
526226.Gbro_4733(PF01527)
526226.Gbro_0439(PF02224)
526226.Gbro_2657(PF01527)
526226.Gbro_2494(PF09995)
526226.Gbro_3852(PF09752)
526226.Gbro_1549(PF07884)
526226.Gbro_4434(PF01025)
526226.Gbro_0009(PF00665)
526226.Gbro_2816(PF02224)
526226.Gbro_2810(PF01527)
526226.Gbro_4729(PF01527)
526226.Gbro_4756(PF01025)
526226.Gbro_2716(PF12471)
526226.Gbro_2717(PF07958)
526226.Gbro_0713(PF01527)
526226.Gbro_4542(PF13565)
526226.Gbro_2393(PF13565)
526226.Gbro_2399(PF13450)
526226.Gbro_4710(PF01527)
526226.Gbro_0896(PF01527)
526226.Gbro_4373(PF09995)
526226.Gbro_4702(PF01527)
526226.Gbro_0263(PF13450)
526226.Gbro_1893(PF00665)
526226.Gbro_2616(PF01527)
526226.Gbro_0072(PF13450)
526226.Gbro_0074(PF13450)
526226.Gbro_4767(PF13565)
526226.Gbro_3030(PF13450)
526226.Gbro_0043(PF09995)
526226.Gbro_1664(PF03405)
526226.Gbro_4589(PF09995)
526226.Gbro_4809(PF11927)
526226.Gbro_1500(PF01527)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================