Effective results for Candidatus Liberibacter asiaticus str. psy62 (eggnog40)

Summary

Number of putative secreted proteins: 56
- Predicted by T4SEpre: 56
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 14 proteins (0 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
537021.CLIBASIA_01355+(mitochondrial)
537021.CLIBASIA_00420+ER
537021.CLIBASIA_00455+(mitochondrial)
537021.CLIBASIA_04115+ER
537021.CLIBASIA_03175+(mitochondrial)
537021.CLIBASIA_00735+(mitochondrial)
537021.CLIBASIA_04580+ER
537021.CLIBASIA_04265+ER
537021.CLIBASIA_04410+ER
537021.CLIBASIA_00405+ER
537021.CLIBASIA_02075+ER
537021.CLIBASIA_05000+ER
537021.CLIBASIA_04675+ER
537021.CLIBASIA_03230+ER
537021.CLIBASIA_03800(PF06455)ER
537021.CLIBASIA_02145+ER
537021.CLIBASIA_04685+mitochondrial
537021.CLIBASIA_05660(PF08707)(mitochondrial)
537021.CLIBASIA_05520(PF00625)plastid
537021.CLIBASIA_03610+(mitochondrial)
537021.CLIBASIA_00055(PF00625)plastid
537021.CLIBASIA_01365+
537021.CLIBASIA_03700(PF00268)
537021.CLIBASIA_03865+
537021.CLIBASIA_01455+
537021.CLIBASIA_05395(PF01653)
537021.CLIBASIA_05625+
537021.CLIBASIA_02620+
537021.CLIBASIA_04325(PF00268)
537021.CLIBASIA_00075(PF00268)
537021.CLIBASIA_04180+
537021.CLIBASIA_04595+
537021.CLIBASIA_04555+
537021.CLIBASIA_04655(PF01442)
537021.CLIBASIA_01515+
537021.CLIBASIA_04155+
537021.CLIBASIA_02945+
537021.CLIBASIA_04045(PF00625)
537021.CLIBASIA_05485(PF08707)
537021.CLIBASIA_02500+
537021.CLIBASIA_02820+
537021.CLIBASIA_05415+
537021.CLIBASIA_02215+
537021.CLIBASIA_00535+
537021.CLIBASIA_01720+
537021.CLIBASIA_00050(PF01653)
537021.CLIBASIA_00900+
537021.CLIBASIA_03970+
537021.CLIBASIA_05515(PF01653)
537021.CLIBASIA_02255+
537021.CLIBASIA_03185+
537021.CLIBASIA_03580+
537021.CLIBASIA_03335+
537021.CLIBASIA_04405+
537021.CLIBASIA_01585+
537021.CLIBASIA_04535(PF00268)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================