Effective results for Neisseria elongata subsp. glycolytica ATCC 29315 (eggnog40)

Summary

Number of putative secreted proteins: 47
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 47 proteins (0 high, 47 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
546263.NEIELOOT_00633(PF03083)(ER); (mitochondrial)
546263.NEIELOOT_00501(PF12762)(mitochondrial)
546263.NEIELOOT_02698(PF03162)ER
546263.NEIELOOT_02585(PF13429)ER
546263.NEIELOOT_01737(PF00344)ER
546263.NEIELOOT_02534(PF12762)ER; (ER)
546263.NEIELOOT_03020(PF05598)(plastid)
546263.NEIELOOT_00934(PF01755)(mitochondrial)
546263.NEIELOOT_02897(PF09511)(mitochondrial)
546263.NEIELOOT_02681(PF05598)(plastid)
546263.NEIELOOT_02904(PF14413) (PF04446)
546263.NEIELOOT_00177(PF05598)(mitochondrial)
546263.NEIELOOT_03051(PF01195)
546263.NEIELOOT_03050(PF01195)
546263.NEIELOOT_03137(PF05598)not used
546263.NEIELOOT_02472(PF05598)
546263.NEIELOOT_02473(PF05598)
546263.NEIELOOT_00932(PF01755)
546263.NEIELOOT_00931(PF01755)not used
546263.NEIELOOT_00869(PF01885)
546263.NEIELOOT_00868(PF01885)
546263.NEIELOOT_03067(PF05598)
546263.NEIELOOT_01838(PF05598)
546263.NEIELOOT_02324(PF01795)
546263.NEIELOOT_02323(PF01795)
546263.NEIELOOT_00209(PF00562)
546263.NEIELOOT_00208(PF00562)
546263.NEIELOOT_02133(PF05697)not used
546263.NEIELOOT_02132(PF05697)
546263.NEIELOOT_00484(PF05167)
546263.NEIELOOT_01112(PF05167)
546263.NEIELOOT_01299(PF12762)
546263.NEIELOOT_02752(PF12762)
546263.NEIELOOT_02747(PF05598)
546263.NEIELOOT_01736(PF00344)
546263.NEIELOOT_02495(PF13429)
546263.NEIELOOT_02382(PF05598)
546263.NEIELOOT_02841(PF04127)
546263.NEIELOOT_02840(PF04127)
546263.NEIELOOT_03147(PF05598)
546263.NEIELOOT_03145(PF05598)
546263.NEIELOOT_02033(PF05598)
546263.NEIELOOT_00385(PF05598)
546263.NEIELOOT_02633(PF05598)
546263.NEIELOOT_00775(PF03083)
546263.NEIELOOT_01950(PF05598)
546263.NEIELOOT_02280(PF11969)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================