Effective results for Francisella sp. TX077308 (eggnog40)

Summary

Number of putative secreted proteins: 58
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 58 proteins (25 high, 33 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
573569.F7308_0087PF03222mitochondrial
573569.F7308_1840PF03222(mitochondrial); (plastid)
573569.F7308_1444PF05023ER
573569.F7308_1053PF00854ER; (ER)
573569.F7308_1473(PF07224)ER
573569.F7308_1869(PF02931)ER
573569.F7308_1071PF00854ER
573569.F7308_1070(PF02275)ER
573569.F7308_1675PF00854ER
573569.F7308_1067(PF04488)(mitochondrial)
573569.F7308_1334PF00854ER; (ER)
573569.F7308_1430(PF01346)ER
573569.F7308_1433(PF04193)ER
573569.F7308_1432(PF01346)ER
573569.F7308_0169PF03222(ER); ER
573569.F7308_0019PF03222ER
573569.F7308_1563PF00854ER
573569.F7308_1376(PF03767)ER
573569.F7308_1610PF03222ER
573569.F7308_0490PF03222ER
573569.F7308_1387PF00854ER; (ER)
573569.F7308_1969(PF07168)ER
573569.F7308_0967(PF02275)ER
573569.F7308_0046PF00854ER
573569.F7308_1459(PF01346)ER
573569.F7308_1838PF03222ER
573569.F7308_1220(PF03767)ER
573569.F7308_0067(PF09419)(mitochondrial)
573569.F7308_0066(PF01346)ER
573569.F7308_1925(PF00657)ER
573569.F7308_1458(PF01346)ER
573569.F7308_1021(PF02275)ER
573569.F7308_0518(PF00657)ER
573569.F7308_0886(PF01000) (PF01193)
573569.F7308_0257(PF01000) (PF01193)
573569.F7308_0418(PF04193)(ER)
573569.F7308_1784PF00854(ER)
573569.F7308_1533PF00854(ER)
573569.F7308_1839PF03222(mitochondrial)
573569.F7308_0720PF03222(ER)
573569.F7308_0728PF03222(ER)
573569.F7308_1445PF05023
573569.F7308_1470(PF02275)
573569.F7308_0656(PF03767)
573569.F7308_0417(PF04193)
573569.F7308_0125(PF04488)
573569.F7308_1798PF00854
573569.F7308_0755(PF03331)not used
573569.F7308_0756(PF03331)
573569.F7308_0749(PF03331)
573569.F7308_1631PF00854
573569.F7308_1752PF00854
573569.F7308_0390(PF10013)not used
573569.F7308_0158(PF03331)
573569.F7308_1396(PF05153)
573569.F7308_1717PF03222
573569.F7308_0449(PF00657)
573569.F7308_1827(PF00657)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.125 (1/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================