Effective results for Desulfobulbus propionicus DSM 2032 (eggnog40)

Summary

Number of putative secreted proteins: 105
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 105 proteins (2 high, 103 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
577650.Despr_1396(PF00037) (PF12838)(mitochondrial); mitochondrial
577650.Despr_2873(PF01326)mitochondrial
577650.Despr_1366(PF00989)ER
577650.Despr_2693(PF04930)ER
577650.Despr_1417(PF00989)ER
577650.Despr_1987PF01591ER
577650.Despr_2867(PF01326)(mitochondrial)
577650.Despr_2865(PF01326)(mitochondrial)
577650.Despr_3336(PF00989)ER
577650.Despr_0359(PF09458)ER
577650.Despr_0571(PF00989)mitochondrial; (mitochondrial)
577650.Despr_1760(PF00989)ER
577650.Despr_1763(PF12838)(mitochondrial)
577650.Despr_0964(PF00989)(ER)
577650.Despr_3000(PF00989)(ER); ER
577650.Despr_1142(PF00989)ER
577650.Despr_2306(PF00989)ER
577650.Despr_1211(PF00989)ER
577650.Despr_3207(PF01058)(mitochondrial)
577650.Despr_0621(PF00989)ER
577650.Despr_1593(PF00112)ER
577650.Despr_1694(PF00989)ER
577650.Despr_1693(PF00989)ER
577650.Despr_0989(PF00989)mitochondrial
577650.Despr_0602(PF00989)ER
577650.Despr_0282(PF00989)ER
577650.Despr_2928(PF00902)ER
577650.Despr_0388(PF09458)ER
577650.Despr_1381(PF12838)mitochondrial
577650.Despr_0128(PF00989)ER
577650.Despr_1529(PF00989)ER
577650.Despr_0004(PF00037)ER
577650.Despr_0028(PF16561)mitochondrial
577650.Despr_1353(PF14691) (PF12838) (PF00037)
577650.Despr_2469(PF00902)(mitochondrial)
577650.Despr_3325(PF01058)(mitochondrial)
577650.Despr_2150(PF02943)(mitochondrial)
577650.Despr_0054(PF14691) (PF12838)
577650.Despr_2111(PF12838)(mitochondrial)
577650.Despr_1713(PF00989)plastid
577650.Despr_0008(PF00037) (PF12838)
577650.Despr_1601(PF01257) (PF12838)
577650.Despr_1600(PF01257) (PF00037)
577650.Despr_0581(PF00989)
577650.Despr_0580(PF00989)
577650.Despr_0584(PF00112)
577650.Despr_1187(PF00989)
577650.Despr_1743(PF01058)
577650.Despr_1741(PF12838)
577650.Despr_2696(PF01326)
577650.Despr_0839(PF03692)
577650.Despr_2055(PF00037)
577650.Despr_2059(PF01257)
577650.Despr_1985(PF10571)
577650.Despr_1981(PF00902)
577650.Despr_2992(PF03692)
577650.Despr_2514(PF00989)
577650.Despr_2042(PF01326)
577650.Despr_2417(PF00989)
577650.Despr_1788(PF01058)
577650.Despr_2039(PF03692)
577650.Despr_3140(PF00037)
577650.Despr_2531(PF02475)
577650.Despr_1207(PF16983)
577650.Despr_1205(PF00989)
577650.Despr_2941(PF00037)
577650.Despr_0419(PF03692)
577650.Despr_2012(PF00037)
577650.Despr_0897(PF14691)
577650.Despr_2559(PF03692)
577650.Despr_2950(PF03692)
577650.Despr_0620(PF00989)
577650.Despr_1599(PF01257)
577650.Despr_2813(PF01326)
577650.Despr_1866(PF12838)
577650.Despr_1862(PF01058)
577650.Despr_1907(PF14691)
577650.Despr_1118(PF00037)
577650.Despr_1117(PF00037)
577650.Despr_0608PF04457
577650.Despr_2127(PF00037)
577650.Despr_2126(PF00037)
577650.Despr_2125(PF01257)
577650.Despr_2128(PF14691)
577650.Despr_3242(PF12838)
577650.Despr_0841(PF00989)
577650.Despr_0012(PF01058)
577650.Despr_1635(PF14691)
577650.Despr_0126(PF00989)
577650.Despr_1732(PF00989)
577650.Despr_1605(PF00037)
577650.Despr_0865(PF01058)
577650.Despr_0869(PF12838)
577650.Despr_1616(PF03692)
577650.Despr_0815(PF03692)
577650.Despr_2888(PF14691)
577650.Despr_0759(PF00989)
577650.Despr_1191(PF00989)
577650.Despr_1197(PF16561)
577650.Despr_2061(PF01058)
577650.Despr_2066(PF01257)
577650.Despr_2067(PF01257)
577650.Despr_2069(PF01058)
577650.Despr_2470(PF00902)
577650.Despr_1357(PF12838)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================