Effective results for Thermovirga lienii DSM 17291 (eggnog40)

Summary

Number of putative secreted proteins: 76
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 76 proteins (8 high, 68 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
580340.Tlie_0491(PF16653)(ER)
580340.Tlie_0022(PF16653)ER
580340.Tlie_0962(PF00137)ER
580340.Tlie_0968(PF01813)mitochondrial; (mitochondrial)
580340.Tlie_1496(PF01496)ER
580340.Tlie_1495(PF00137)ER
580340.Tlie_1492(PF02874) (PF16886)(mitochondrial)
580340.Tlie_1499(PF01813)mitochondrial
580340.Tlie_0157(PF16653)(mitochondrial)
580340.Tlie_0908(PF00137)ER
580340.Tlie_0910PF01992(mitochondrial)
580340.Tlie_0966(PF02874) (PF16886)
580340.Tlie_0373(PF02971) (PF07837)
580340.Tlie_0576(PF14336)(mitochondrial)
580340.Tlie_1711(PF01210) (PF02317)
580340.Tlie_1537(PF14697)(plastid)
580340.Tlie_1199(PF14697) (PF13237)
580340.Tlie_0907(PF01496)(ER)
580340.Tlie_1506(PF01210) (PF02317)
580340.Tlie_0914(PF01813)(mitochondrial)
580340.Tlie_0912(PF02874) (PF16886)
580340.Tlie_1337(PF00872)
580340.Tlie_0340(PF00872)
580340.Tlie_1214(PF00872)
580340.Tlie_1786(PF00872)
580340.Tlie_0303(PF13518)
580340.Tlie_0788(PF13518)
580340.Tlie_0468(PF13518)
580340.Tlie_1221(PF00872)
580340.Tlie_1353(PF13518)
580340.Tlie_0256(PF16653)
580340.Tlie_0242(PF00872)
580340.Tlie_1115(PF14697)
580340.Tlie_0960PF03179
580340.Tlie_0961(PF01496)
580340.Tlie_0963PF01991
580340.Tlie_0964PF01992
580340.Tlie_0965(PF01990)
580340.Tlie_0967(PF02874)
580340.Tlie_0180(PF13237)
580340.Tlie_0297(PF14697)
580340.Tlie_1626(PF13237)
580340.Tlie_0290(PF00872)
580340.Tlie_0353(PF14792)
580340.Tlie_0359(PF13237)not used
580340.Tlie_1392(PF00872)
580340.Tlie_1830(PF00872)
580340.Tlie_0361(PF01210)
580340.Tlie_0707(PF13518)
580340.Tlie_1380(PF00872)
580340.Tlie_1497PF01992
580340.Tlie_1494(PF01990)
580340.Tlie_1493PF01991
580340.Tlie_1491(PF02874)
580340.Tlie_0952(PF13237)
580340.Tlie_0379(PF00755)
580340.Tlie_0719(PF00872)
580340.Tlie_1538(PF14697)
580340.Tlie_0009(PF00872)
580340.Tlie_1532(PF00872)
580340.Tlie_1857(PF00872)
580340.Tlie_1036(PF00872)
580340.Tlie_1453PF04414
580340.Tlie_0939(PF13518)
580340.Tlie_1511(PF00872)
580340.Tlie_0497(PF00872)
580340.Tlie_0909PF01991
580340.Tlie_0129(PF13518)
580340.Tlie_0234(PF00872)
580340.Tlie_1504(PF02317)
580340.Tlie_1475(PF00872)
580340.Tlie_0913(PF02874)
580340.Tlie_0217(PF00872)
580340.Tlie_0077(PF02874)
580340.Tlie_1412(PF00872)
580340.Tlie_1248(PF14697)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================