Effective results for Acetobacter pasteurianus IFO 3283-01 (eggnog40)

Summary

Number of putative secreted proteins: 75
- Predicted by T4SEpre: 63
- Predicted by EffectiveELD: 4 eukaryotic-like domains, contained in 21 proteins (1 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
634452.APA01_23520+(ER)
634452.APA01_09340+(mitochondrial)
634452.APA01_18850+ER
634452.APA01_19450+(ER)
634452.APA01_20400+ER
634452.APA01_14260+(ER)
634452.APA01_02000+(mitochondrial); plastid
634452.APA01_01740+mitochondrial; (mitochondrial)
634452.APA01_15180+(mitochondrial)
634452.APA01_08740+mitochondrial
634452.APA01_19200+(mitochondrial)
634452.APA01_16680+(mitochondrial)
634452.APA01_00880+(ER)
634452.APA01_12820+mitochondrial
634452.APA01_24700+ER
634452.APA01_12310+(mitochondrial)
634452.APA01_24020+(mitochondrial)
634452.APA01_10620+mitochondrial
634452.APA01_23210+(mitochondrial); (ER)
634452.APA01_01690+(mitochondrial)
634452.APA01_23510+(mitochondrial); mitochondrial
634452.APA01_01190+(mitochondrial)
634452.APA01_15000+ER
634452.APA01_11560+(mitochondrial)
634452.APA01_22790+(ER)
634452.APA01_11600+(mitochondrial)
634452.APA01_09540+(mitochondrial)
634452.APA01_19870+(mitochondrial)
634452.APA01_13870+(plastid)
634452.APA01_19070+(ER)
634452.APA01_25340+PF01387
634452.APA01_22910+(mitochondrial)
634452.APA01_17380+
634452.APA01_17890(PF01527)
634452.APA01_08320+
634452.APA01_08170(PF01527)
634452.APA01_20780+
634452.APA01_01800(PF01527)
634452.APA01_08370(PF01527)
634452.APA01_03620+
634452.APA01_24050(PF01527)
634452.APA01_09210+
634452.APA01_08620+
634452.APA01_19310(PF06258)
634452.APA01_21650(PF01527)
634452.APA01_16988+
634452.APA01_10400+
634452.APA01_18780(PF01527)
634452.APA01_17970+
634452.APA01_23860(PF01527)
634452.APA01_19420+
634452.APA01_18240(PF01527)
634452.APA01_26420+
634452.APA01_00520+
634452.APA01_07150+
634452.APA01_17950(PF01527)
634452.APA01_08650+
634452.APA01_20960(PF01527)
634452.APA01_18880+
634452.APA01_06440+
634452.APA01_11350+
634452.APA01_04360+
634452.APA01_08410(PF01527)
634452.APA01_14310(PF01527)
634452.APA01_18190+
634452.APA01_15860(PF01527)
634452.APA01_21230(PF06258)
634452.APA01_11370+
634452.APA01_21150+
634452.APA01_23970(PF01527)
634452.APA01_14360(PF01527)
634452.APA01_06470+
634452.APA01_09860+
634452.APA01_01070(PF12513)
634452.APA01_20880(PF01527)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.3 (3/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================