Effective results for Shewanella violacea DSS12 (eggnog40)

Summary

Number of putative secreted proteins: 63
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 25 eukaryotic-like domains, contained in 63 proteins (3 high, 60 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
637905.SVI_1093(PF13582) (PF00801)ER
637905.SVI_1094(PF05572) (PF00801)ER; (ER)
637905.SVI_2644(PF00801)ER
637905.SVI_0874(PF00801)ER
637905.SVI_3085(PF07766)mitochondrial
637905.SVI_0833(PF14312)ER
637905.SVI_2320(PF09317)ER
637905.SVI_1964(PF05023)ER
637905.SVI_2434(PF05572)ER
637905.SVI_0876(PF00801)ER
637905.SVI_3114(PF09619)ER
637905.SVI_2427(PF06041)(ER); ER
637905.SVI_4266(PF00031)ER
637905.SVI_3108(PF09619)ER
637905.SVI_3906(PF06468)mitochondrial; (mitochondrial)
637905.SVI_3905(PF06468)ER
637905.SVI_2272(PF09619)ER
637905.SVI_2381(PF09317)ER
637905.SVI_3757(PF00849)mitochondrial
637905.SVI_2441(PF00305) PF00168
637905.SVI_1856(PF02460)(mitochondrial)
637905.SVI_0677(PF06041)(mitochondrial)
637905.SVI_2101(PF13391)(mitochondrial)
637905.SVI_1922(PF00801) (PF05572)
637905.SVI_0871(PF00801)ER
637905.SVI_1570(PF00849)(ER)
637905.SVI_2887(PF13391)(mitochondrial)
637905.SVI_3488(PF03199) (PF03917)
637905.SVI_3719(PF00801)(mitochondrial)
637905.SVI_1669PF08030 (PF08022)
637905.SVI_1052(PF06041)
637905.SVI_2652(PF13495)
637905.SVI_3526(PF14312)
637905.SVI_1840(PF08487)
637905.SVI_2647(PF13495)
637905.SVI_0072(PF01218)not used
637905.SVI_0071(PF01218)not used
637905.SVI_0070(PF01218)
637905.SVI_1823(PF00849)
637905.SVI_4237(PF00849)
637905.SVI_1318(PF09317)
637905.SVI_2114(PF08487)
637905.SVI_3569(PF00849)
637905.SVI_1155(PF03945)
637905.SVI_0822(PF00849)
637905.SVI_2797(PF00849)
637905.SVI_3426(PF00849)
637905.SVI_3431(PF00849)
637905.SVI_3127(PF00849)
637905.SVI_1681(PF13495)
637905.SVI_1195(PF13495)
637905.SVI_1224(PF00849)
637905.SVI_2554(PF00849)
637905.SVI_3591(PF00849)
637905.SVI_4260(PF00801)
637905.SVI_2132(PF00849)
637905.SVI_2524PF01536
637905.SVI_3210(PF00849)
637905.SVI_3923(PF08022)
637905.SVI_2502(PF13495)
637905.SVI_1396(PF13391)
637905.SVI_3651(PF00849)
637905.SVI_3039(PF00849)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.75 (6/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================