Effective results for Prevotella timonensis CRIS 5C-B1 (eggnog40)

Summary

Number of putative secreted proteins: 36
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 36 proteins (4 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
679189.HMPREF9019_0317(PF02838) (PF00728) (PF13287)ER
679189.HMPREF9019_1143(PF02838) (PF00728)ER
679189.HMPREF9019_1444(PF02838) (PF00728)ER
679189.HMPREF9019_0432(PF02838) (PF00728)ER
679189.HMPREF9019_0308(PF03051)(mitochondrial)
679189.HMPREF9019_1232(PF13905)ER
679189.HMPREF9019_1769(PF16313)mitochondrial; ER
679189.HMPREF9019_1764(PF16313)ER
679189.HMPREF9019_0490(PF03051)ER
679189.HMPREF9019_2257(PF13287)ER
679189.HMPREF9019_1757(PF16011)(mitochondrial)
679189.HMPREF9019_0888(PF13905)ER
679189.HMPREF9019_0701(PF01715)ER
679189.HMPREF9019_1658PF03644ER
679189.HMPREF9019_1396(PF16313)ER
679189.HMPREF9019_1417PF03644ER
679189.HMPREF9019_1400(PF13905)ER
679189.HMPREF9019_0599PF03644ER
679189.HMPREF9019_0551(PF02838) (PF00728)
679189.HMPREF9019_1492(PF02838) (PF00728)
679189.HMPREF9019_0363(PF01715)(plastid)
679189.HMPREF9019_2021(PF16313)(mitochondrial)
679189.HMPREF9019_1147(PF16314)
679189.HMPREF9019_0305(PF03630)
679189.HMPREF9019_2147(PF01807)
679189.HMPREF9019_1954(PF05970)
679189.HMPREF9019_1811(PF01535)
679189.HMPREF9019_0365(PF05970)
679189.HMPREF9019_1960(PF01807)
679189.HMPREF9019_1577(PF01807)
679189.HMPREF9019_1121PF16269
679189.HMPREF9019_0864(PF05693)
679189.HMPREF9019_0259(PF01807)
679189.HMPREF9019_1730(PF03051)
679189.HMPREF9019_0839(PF13905)
679189.HMPREF9019_0331(PF02838)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================