Effective results for Helicobacter mustelae 12198 (eggnog40)

Summary

Number of putative secreted proteins: 60
- Predicted by T4SEpre: 74
- Predicted by EffectiveELD: 2 eukaryotic-like domains, contained in 2 proteins (1 high, 1 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
679897.HMU10390+mitochondrial; (mitochondrial)
679897.HMU10650+ER
679897.HMU07540+mitochondrial
679897.HMU06040+(mitochondrial); mitochondrial
679897.HMU09640+mitochondrial; (mitochondrial)
679897.HMU04770+(ER); ER
679897.HMU11510+ER
679897.HMU02920+ER
679897.HMU09100+ER
679897.HMU12190+ER
679897.HMU10590+(mitochondrial); (plastid)
679897.HMU07750+(ER); ER
679897.HMU13630+(ER)
679897.HMU08980+ER
679897.HMU11560+ER
679897.HMU03940+ER
679897.HMU02030+ER
679897.HMU02820+ER
679897.HMU09370+ER
679897.HMU02240+ER; mitochondrial
679897.HMU12700+ER
679897.HMU11810+(mitochondrial)
679897.HMU06390+(mitochondrial)
679897.HMU12020+(mitochondrial)
679897.HMU11870+(mitochondrial)
679897.HMU02410+
679897.HMU05310(PF05686)
679897.HMU03890+
679897.HMU10900+
679897.HMU12640+
679897.HMU12080+
679897.HMU06940+
679897.HMU05150+
679897.HMU07770+
679897.HMU08170+
679897.HMU12050PF03414
679897.HMU10110+
679897.HMU00030+
679897.HMU07070+
679897.HMU11420+
679897.HMU02360+
679897.HMU09030+
679897.HMU04210+
679897.HMU14240+
679897.HMU10540+
679897.HMU09620+
679897.HMU09380+
679897.HMU04290+
679897.HMU09950+
679897.HMU06830+
679897.HMU01180+
679897.HMU10620+
679897.HMU03720+
679897.HMU14170+
679897.HMU00130+
679897.HMU02460+
679897.HMU06340+
679897.HMU06570+
679897.HMU11020+
679897.HMU14120+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.375 (3/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================