Effective results for Paenibacillus curdlanolyticus YK9 (eggnog40)

Summary

Number of putative secreted proteins: 144
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 35 eukaryotic-like domains, contained in 144 proteins (13 high, 131 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
717606.PaecuDRAFT_2080PF03423 PF00686 (PF04450) (PF00754) (PF00041)ER
717606.PaecuDRAFT_2082PF03423 PF00686 (PF04450) (PF00754) (PF00041)ER
717606.PaecuDRAFT_3054(PF02055) (PF00395) (PF03422) (PF17189) (PF00041)ER
717606.PaecuDRAFT_3514(PF02018) (PF00395) (PF03422) (PF00754)ER
717606.PaecuDRAFT_3044(PF02018) (PF00395) (PF00754)ER
717606.PaecuDRAFT_4662(PF02018) (PF00395) (PF03422)ER
717606.PaecuDRAFT_0919(PF13290) (PF03422) (PF00754)ER
717606.PaecuDRAFT_0918(PF13290) (PF03422) (PF00754)ER
717606.PaecuDRAFT_3020(PF00395) (PF03422) (PF00041)ER
717606.PaecuDRAFT_0954(PF03442) (PF16990)ER
717606.PaecuDRAFT_1686(PF00754) (PF16990)ER
717606.PaecuDRAFT_1684(PF03714) (PF00395)ER
717606.PaecuDRAFT_2403(PF01833) PF03639ER
717606.PaecuDRAFT_3045(PF00754) PF03639(mitochondrial); (ER)
717606.PaecuDRAFT_3464(PF00754) PF03639mitochondrial
717606.PaecuDRAFT_2320(PF13290) (PF00395)ER
717606.PaecuDRAFT_3055(PF02055) (PF17189) (PF03422)(ER)
717606.PaecuDRAFT_4265PF03423 (PF00041)ER
717606.PaecuDRAFT_3492(PF13290) (PF00754) PF03639(mitochondrial)
717606.PaecuDRAFT_0917(PF13290) (PF03422)ER
717606.PaecuDRAFT_3394PF03423 (PF00041)ER
717606.PaecuDRAFT_1386(PF00754) (PF00041)ER
717606.PaecuDRAFT_4384(PF02055) (PF17189)ER
717606.PaecuDRAFT_2469(PF00395) (PF16990)ER
717606.PaecuDRAFT_4391(PF00395) (PF16990)(ER)
717606.PaecuDRAFT_1855PF03423 (PF00041)ER
717606.PaecuDRAFT_1854(PF03422) (PF00754)ER
717606.PaecuDRAFT_0087(PF00395) (PF00754)ER
717606.PaecuDRAFT_3195(PF01833) PF00686(ER)
717606.PaecuDRAFT_4352(PF02018) (PF00395)ER
717606.PaecuDRAFT_2905(PF00395) (PF00041)ER
717606.PaecuDRAFT_1020(PF00754) (PF16990)ER
717606.PaecuDRAFT_4239(PF00395) (PF00041)ER
717606.PaecuDRAFT_0017(PF00041)ER
717606.PaecuDRAFT_1309(PF00395)ER
717606.PaecuDRAFT_1198(PF09992)mitochondrial; (mitochondrial)
717606.PaecuDRAFT_1199(PF01833)ER
717606.PaecuDRAFT_2531(PF00395)mitochondrial
717606.PaecuDRAFT_2628(PF13276)(mitochondrial)
717606.PaecuDRAFT_3688(PF10067)ER
717606.PaecuDRAFT_3465(PF00754)ER
717606.PaecuDRAFT_3466(PF00754)ER; (ER)
717606.PaecuDRAFT_4115(PF00395)(ER)
717606.PaecuDRAFT_3475(PF00395)ER
717606.PaecuDRAFT_4270(PF10067)ER
717606.PaecuDRAFT_2640(PF00395)mitochondrial; (mitochondrial)
717606.PaecuDRAFT_0379(PF00395)ER
717606.PaecuDRAFT_1420(PF00395)ER
717606.PaecuDRAFT_2049(PF00754)ER
717606.PaecuDRAFT_2605(PF00395)ER
717606.PaecuDRAFT_2603(PF13276)mitochondrial
717606.PaecuDRAFT_4605PF00686ER
717606.PaecuDRAFT_4044(PF00395)ER
717606.PaecuDRAFT_1668(PF16657)ER
717606.PaecuDRAFT_1722(PF01833)ER; (ER)
717606.PaecuDRAFT_2077(PF00754)mitochondrial
717606.PaecuDRAFT_4452(PF00395)ER
717606.PaecuDRAFT_3496(PF00395)ER
717606.PaecuDRAFT_3395PF03423(ER)
717606.PaecuDRAFT_4629(PF01391)ER
717606.PaecuDRAFT_2334(PF00041)ER
717606.PaecuDRAFT_2491(PF09992)ER
717606.PaecuDRAFT_2136(PF00395)ER
717606.PaecuDRAFT_2883(PF03442)ER
717606.PaecuDRAFT_1299(PF00395)mitochondrial; (mitochondrial)
717606.PaecuDRAFT_3722(PF10067)ER
717606.PaecuDRAFT_4344(PF00041)ER
717606.PaecuDRAFT_4345(PF00041)ER
717606.PaecuDRAFT_4346(PF00041)ER
717606.PaecuDRAFT_1823(PF03422)ER
717606.PaecuDRAFT_1824(PF00395)ER
717606.PaecuDRAFT_4193(PF00395)ER
717606.PaecuDRAFT_0981PF03370ER
717606.PaecuDRAFT_2903(PF17189)ER
717606.PaecuDRAFT_2584(PF00754)ER
717606.PaecuDRAFT_2582(PF02333)ER
717606.PaecuDRAFT_2583(PF02333)ER
717606.PaecuDRAFT_3968(PF13276)mitochondrial
717606.PaecuDRAFT_4037(PF09992)(mitochondrial); mitochondrial
717606.PaecuDRAFT_4038(PF00395)ER
717606.PaecuDRAFT_2552(PF00395)ER
717606.PaecuDRAFT_0514(PF09992)ER
717606.PaecuDRAFT_2915(PF00395)ER
717606.PaecuDRAFT_2913(PF13276)mitochondrial
717606.PaecuDRAFT_1335(PF01391)mitochondrial
717606.PaecuDRAFT_2570(PF00395)ER
717606.PaecuDRAFT_4303(PF00395)ER
717606.PaecuDRAFT_4013(PF01833)ER
717606.PaecuDRAFT_0846(PF00041)ER
717606.PaecuDRAFT_3933(PF13276)mitochondrial
717606.PaecuDRAFT_3207(PF00395)ER
717606.PaecuDRAFT_4644(PF00395)ER
717606.PaecuDRAFT_4665(PF03318)(plastid)
717606.PaecuDRAFT_4276(PF02018)(mitochondrial)
717606.PaecuDRAFT_4043(PF00395)(mitochondrial)
717606.PaecuDRAFT_1662(PF03714) (PF00395)
717606.PaecuDRAFT_4379(PF00041)(ER)
717606.PaecuDRAFT_3037(PF02055) (PF17189)
717606.PaecuDRAFT_3179(PF08323)(ER)
717606.PaecuDRAFT_0485(PF01391)
717606.PaecuDRAFT_1190(PF00395)
717606.PaecuDRAFT_3271(PF00334)
717606.PaecuDRAFT_2318(PF16657)
717606.PaecuDRAFT_4409(PF00041)
717606.PaecuDRAFT_3918(PF13276)
717606.PaecuDRAFT_4067(PF00395)
717606.PaecuDRAFT_1365(PF00334)
717606.PaecuDRAFT_4723(PF09359)
717606.PaecuDRAFT_4279(PF00041)
717606.PaecuDRAFT_2338(PF13276)
717606.PaecuDRAFT_0906(PF03538)
717606.PaecuDRAFT_0905(PF12255)
717606.PaecuDRAFT_2848(PF03422)
717606.PaecuDRAFT_1866(PF09992)
717606.PaecuDRAFT_2446(PF09359)
717606.PaecuDRAFT_0437(PF16657)
717606.PaecuDRAFT_2497(PF00707)
717606.PaecuDRAFT_4762(PF01391)not used
717606.PaecuDRAFT_4387(PF03422)
717606.PaecuDRAFT_1285(PF00707)
717606.PaecuDRAFT_2394(PF09359)
717606.PaecuDRAFT_2465(PF08670)
717606.PaecuDRAFT_2464(PF08670)
717606.PaecuDRAFT_4397(PF16657)
717606.PaecuDRAFT_0893(PF00334)
717606.PaecuDRAFT_0074(PF07247)
717606.PaecuDRAFT_4562(PF13276)
717606.PaecuDRAFT_0713(PF08323)
717606.PaecuDRAFT_0712(PF08323)
717606.PaecuDRAFT_3194(PF16657)
717606.PaecuDRAFT_0189(PF17125)
717606.PaecuDRAFT_3185(PF16657)
717606.PaecuDRAFT_4218(PF16657)
717606.PaecuDRAFT_4321(PF13276)
717606.PaecuDRAFT_0193(PF17125)
717606.PaecuDRAFT_0682(PF09992)
717606.PaecuDRAFT_2178(PF13276)
717606.PaecuDRAFT_3424(PF08323)
717606.PaecuDRAFT_0215(PF09419)
717606.PaecuDRAFT_0034(PF00395)
717606.PaecuDRAFT_4838(PF17125)
717606.PaecuDRAFT_4306(PF13276)
717606.PaecuDRAFT_4786(PF01391)
717606.PaecuDRAFT_4225(PF16804)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================