Effective results for Pseudoalteromonas haloplanktis ANT/505 (eggnog40)

Summary

Number of putative secreted proteins: 41
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 41 proteins (0 high, 41 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
722419.PH505_at00170(PF13202) (PF00036)(ER)
722419.PH505_ak00720(PF16187)ER
722419.PH505_at00160(PF13202)ER
722419.PH505_ai00460(PF03959)ER; (ER)
722419.PH505_ac00610(PF13202)ER
722419.PH505_bv00190(PF13202)ER
722419.PH505_dg00010(PF09317)(mitochondrial)
722419.PH505_av00110(PF14240)ER
722419.PH505_aq00380(PF00028)ER
722419.PH505_bv00220(PF13202)ER
722419.PH505_ao00070(PF07646)ER
722419.PH505_ae00740(PF00028)ER
722419.PH505_av00720(PF09317)ER
722419.PH505_al00370(PF13582)(ER)
722419.PH505_ar00290(PF13202)ER
722419.PH505_bv00200(PF13202)ER
722419.PH505_cc00040(PF02460)(ER)
722419.PH505_af00370(PF13202)ER
722419.PH505_af00390(PF13202)ER; (ER)
722419.PH505_aq00850(PF01564)ER
722419.PH505_bf00250(PF13429)(ER)
722419.PH505_al00310(PF01564)ER
722419.PH505_aj00450(PF13429)ER
722419.PH505_at00150(PF13202)ER; (ER)
722419.PH505_bn00150(PF14240)ER
722419.PH505_bs00060(PF06315)(mitochondrial)
722419.PH505_bo00200(PF13875)
722419.PH505_bc00210(PF10354)
722419.PH505_bt00160(PF12576)
722419.PH505_ag00930(PF09317)
722419.PH505_ab01330(PF09996)not used
722419.PH505_bg00410(PF01564)
722419.PH505_an00460(PF01564)
722419.PH505_bg00310(PF14240)
722419.PH505_be00410(PF14311)
722419.PH505_bv00210(PF13202)
722419.PH505_ei00010(PF06315)
722419.PH505_ac00480(PF10013)not used
722419.PH505_cj00060(PF16187)
722419.PH505_ab01340(PF09996)
722419.PH505_bk00330(PF01564)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================