Effective results for Thermodesulfobium narugense DSM 14796 (eggnog40)

Summary

Number of putative secreted proteins: 33
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 33 proteins (11 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
747365.Thena_0970				PF15711	ER
747365.Thena_1304				PF14853	ER
747365.Thena_1302				(PF00079)	ER
747365.Thena_0474				PF07735	ER
747365.Thena_1017				PF02493	ER
747365.Thena_0040				PF02493	ER
747365.Thena_1741				PF02493	ER
747365.Thena_1160				(PF00079)	ER
747365.Thena_0428				(PF00162)	(ER)
747365.Thena_0113				(PF13565)
747365.Thena_1364				(PF14697)
747365.Thena_0778				(PF01946)
747365.Thena_1303				PF02493
747365.Thena_1059				(PF13565)
747365.Thena_0158				PF06888
747365.Thena_0551				(PF13565)
747365.Thena_0631				(PF03652)
747365.Thena_1628				(PF00162)
747365.Thena_0296				(PF13565)
747365.Thena_0762				(PF13565)
747365.Thena_1652				(PF14697)
747365.Thena_1618				(PF02943)
747365.Thena_0493				(PF14697)
747365.Thena_1462				PF02493
747365.Thena_0231				(PF14697)
747365.Thena_0901				(PF14697)
747365.Thena_1830				(PF13565)
747365.Thena_0343				(PF14697)
747365.Thena_0640				(PF14697)
747365.Thena_0913				PF04981
747365.Thena_0034				PF02493
747365.Thena_0106				(PF01946)
747365.Thena_0586				(PF03652)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================