Effective results for Bacteroides clarus YIT 12056 (eggnog40)

Summary

Number of putative secreted proteins: 135
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 42 eukaryotic-like domains, contained in 135 proteins (46 high, 89 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
762984.HMPREF9445_02920(PF08124) (PF02884) PF02278ER
762984.HMPREF9445_00234(PF08124) (PF02884) PF02278ER
762984.HMPREF9445_01450PF16332 PF07940ER
762984.HMPREF9445_00577(PF02884) PF02278ER
762984.HMPREF9445_03083PF16332 PF07940ER
762984.HMPREF9445_03082(PF02884) PF02278ER
762984.HMPREF9445_03088PF16332 PF07940ER
762984.HMPREF9445_03092PF16332 PF07940ER; (ER)
762984.HMPREF9445_00002(PF05426) PF07470ER
762984.HMPREF9445_03076PF16332 PF07940ER
762984.HMPREF9445_02675(PF16889) PF07940ER
762984.HMPREF9445_01759(PF03629) PF07470ER
762984.HMPREF9445_02056PF16332 PF07940ER
762984.HMPREF9445_02680(PF16889) PF07940ER
762984.HMPREF9445_01944(PF05426) PF07940ER
762984.HMPREF9445_01156(PF16387)ER; mitochondrial
762984.HMPREF9445_02314(PF00295)ER
762984.HMPREF9445_01142(PF00295)ER
762984.HMPREF9445_00417(PF00216)mitochondrial
762984.HMPREF9445_02012(PF13905)ER
762984.HMPREF9445_02315(PF01095)ER
762984.HMPREF9445_02437(PF00295)ER
762984.HMPREF9445_01911(PF10022)ER
762984.HMPREF9445_01912PF07470ER
762984.HMPREF9445_02618(PF05426)ER; (ER)
762984.HMPREF9445_02972(PF01095)ER
762984.HMPREF9445_02970(PF01095)ER
762984.HMPREF9445_02593(PF05140)ER
762984.HMPREF9445_02343(PF00216)ER
762984.HMPREF9445_01655(PF14592)ER
762984.HMPREF9445_01652(PF14684)ER
762984.HMPREF9445_00283(PF00328)ER
762984.HMPREF9445_01589PF07470ER
762984.HMPREF9445_03080PF07470ER
762984.HMPREF9445_02439(PF02080)ER
762984.HMPREF9445_02438PF07940ER
762984.HMPREF9445_00013PF02278ER
762984.HMPREF9445_00461(PF03629)ER
762984.HMPREF9445_00390(PF00295)ER
762984.HMPREF9445_02423(PF12437)(mitochondrial)
762984.HMPREF9445_03069PF07470ER
762984.HMPREF9445_03068PF07940ER
762984.HMPREF9445_03267(PF12437)mitochondrial; (mitochondrial)
762984.HMPREF9445_02708(PF00295)ER
762984.HMPREF9445_02705(PF03054)mitochondrial
762984.HMPREF9445_00748(PF13905)ER
762984.HMPREF9445_00030PF07470(mitochondrial)
762984.HMPREF9445_02886(PF02080)ER
762984.HMPREF9445_02888(PF14684)ER
762984.HMPREF9445_01295(PF02080)ER
762984.HMPREF9445_00241PF07470ER
762984.HMPREF9445_01756(PF00216)(mitochondrial)
762984.HMPREF9445_02665(PF14684)ER
762984.HMPREF9445_02679PF07470ER
762984.HMPREF9445_00022(PF16011)ER
762984.HMPREF9445_01977(PF01095)ER
762984.HMPREF9445_00235PF07470ER
762984.HMPREF9445_00238PF07470ER
762984.HMPREF9445_00561(PF05140)ER
762984.HMPREF9445_02140(PF00216)(mitochondrial); mitochondrial
762984.HMPREF9445_03127(PF02544)ER
762984.HMPREF9445_02991(PF00295)ER
762984.HMPREF9445_01366(PF02080)mitochondrial
762984.HMPREF9445_02686(PF13905)ER
762984.HMPREF9445_03330(PF13905)ER
762984.HMPREF9445_01319PF02278ER
762984.HMPREF9445_01317PF02278ER
762984.HMPREF9445_01768PF07470ER
762984.HMPREF9445_01762(PF00295)ER
762984.HMPREF9445_01787(PF03629)ER
762984.HMPREF9445_01948(PF14592)ER
762984.HMPREF9445_01947(PF03629)ER
762984.HMPREF9445_01893(PF00328)ER
762984.HMPREF9445_01896(PF03629)ER
762984.HMPREF9445_02958(PF02080)(mitochondrial)
762984.HMPREF9445_02610PF07470(mitochondrial)
762984.HMPREF9445_01905(PF10022) PF07470
762984.HMPREF9445_02605(PF05970) (PF02689)
762984.HMPREF9445_00447PF02357(mitochondrial)
762984.HMPREF9445_02421(PF03630)(plastid)
762984.HMPREF9445_00811(PF16889) PF07940
762984.HMPREF9445_03297(PF02080)(ER)
762984.HMPREF9445_02185(PF02971) (PF07837)
762984.HMPREF9445_02440(PF01715)
762984.HMPREF9445_00309(PF00216)
762984.HMPREF9445_03304(PF13155)
762984.HMPREF9445_01469(PF03796)
762984.HMPREF9445_00406(PF01501)
762984.HMPREF9445_00400PF02357
762984.HMPREF9445_00532(PF02080)
762984.HMPREF9445_00628(PF03796)
762984.HMPREF9445_01667PF16269
762984.HMPREF9445_01910(PF10022)
762984.HMPREF9445_02969PF07470
762984.HMPREF9445_01058(PF00216)
762984.HMPREF9445_00614(PF00216)
762984.HMPREF9445_01470(PF00216)
762984.HMPREF9445_02585(PF01715)
762984.HMPREF9445_00986PF02357
762984.HMPREF9445_00331PF02357
762984.HMPREF9445_00512(PF03796)
762984.HMPREF9445_00516PF02357
762984.HMPREF9445_00047(PF05686)
762984.HMPREF9445_00048(PF01501)
762984.HMPREF9445_00049(PF05704)
762984.HMPREF9445_00299(PF02080)
762984.HMPREF9445_02129PF02357
762984.HMPREF9445_02137(PF03796)
762984.HMPREF9445_00493(PF01501)
762984.HMPREF9445_00492PF04572
762984.HMPREF9445_00656(PF02080)
762984.HMPREF9445_02650(PF13155)
762984.HMPREF9445_03258(PF05693)
762984.HMPREF9445_01524PF02357
762984.HMPREF9445_01386(PF13155)
762984.HMPREF9445_00261(PF03054)
762984.HMPREF9445_03064(PF02080)
762984.HMPREF9445_01500(PF13151)
762984.HMPREF9445_00035(PF03054)
762984.HMPREF9445_00242(PF05140)
762984.HMPREF9445_02982(PF00216)
762984.HMPREF9445_00236(PF05426)
762984.HMPREF9445_00239PF07470
762984.HMPREF9445_01371(PF00216)
762984.HMPREF9445_02279(PF00295)
762984.HMPREF9445_00833(PF05970)
762984.HMPREF9445_00686(PF00216)
762984.HMPREF9445_00685(PF00216)not used
762984.HMPREF9445_02465(PF00958)
762984.HMPREF9445_02466(PF00958)
762984.HMPREF9445_02048(PF00216)
762984.HMPREF9445_01312PF02357
762984.HMPREF9445_01315PF02357
762984.HMPREF9445_01226(PF13155)
762984.HMPREF9445_02845(PF16314)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================