Effective results for Thauera sp. MZ1T (eggnog40)

Summary

Number of putative secreted proteins: 55
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 55 proteins (0 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
85643.Tmz1t_1923(PF08022) (PF01794)ER
85643.Tmz1t_0489(PF08022) (PF01794)ER
85643.Tmz1t_1926(PF01794)ER
85643.Tmz1t_1972(PF13549)(ER); (mitochondrial)
85643.Tmz1t_1563(PF01794)ER
85643.Tmz1t_2846(PF01094)ER
85643.Tmz1t_2616(PF09459)ER
85643.Tmz1t_1267(PF03092)mitochondrial; (mitochondrial)
85643.Tmz1t_0413(PF01814)(mitochondrial)
85643.Tmz1t_1718(PF13549)(mitochondrial)
85643.Tmz1t_3530(PF00163)(mitochondrial)
85643.Tmz1t_3630(PF09830)(mitochondrial)
85643.Tmz1t_0075(PF01794)ER
85643.Tmz1t_4020(PF09459)(ER)
85643.Tmz1t_0858(PF01814)
85643.Tmz1t_3765(PF06258)
85643.Tmz1t_3084(PF01814)
85643.Tmz1t_1351(PF01814)
85643.Tmz1t_1953(PF09361)
85643.Tmz1t_1891(PF01814)
85643.Tmz1t_2304(PF01695)
85643.Tmz1t_1809(PF01814)
85643.Tmz1t_0316(PF01695)
85643.Tmz1t_3313(PF00163)
85643.Tmz1t_3952(PF10013)not used
85643.Tmz1t_1971(PF13549)
85643.Tmz1t_0377(PF01695)
85643.Tmz1t_2089(PF01695)
85643.Tmz1t_2081(PF01814)
85643.Tmz1t_1501(PF13549)
85643.Tmz1t_2522(PF09361)
85643.Tmz1t_0009(PF01695)
85643.Tmz1t_1407(PF01814)
85643.Tmz1t_3861(PF09361)
85643.Tmz1t_3913(PF01814)
85643.Tmz1t_1521(PF01814)
85643.Tmz1t_3158(PF01695)
85643.Tmz1t_0118(PF01695)
85643.Tmz1t_1082(PF01695)
85643.Tmz1t_1390(PF16332)
85643.Tmz1t_2041(PF13549)
85643.Tmz1t_0120(PF01814)
85643.Tmz1t_1071(PF01695)
85643.Tmz1t_1710(PF08487)
85643.Tmz1t_0248(PF01814)
85643.Tmz1t_0509(PF01814)
85643.Tmz1t_2018(PF09361)
85643.Tmz1t_2129(PF08487)
85643.Tmz1t_0875(PF09361)
85643.Tmz1t_0645(PF13549)
85643.Tmz1t_0465(PF01814)
85643.Tmz1t_1024(PF09361)
85643.Tmz1t_2002(PF09830)
85643.Tmz1t_3172(PF01695)
85643.Tmz1t_3771(PF06258)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.25 (10/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================