Effective results for Thermoanaerobacterium xylanolyticum LX-11 (eggnog40)

Summary

Number of putative secreted proteins: 41
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 41 proteins (2 high, 39 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
858215.Thexy_2211				(PF17168)	ER
858215.Thexy_0725				PF17112	ER
858215.Thexy_0460				(PF01930)	ER
858215.Thexy_1941				(PF02971) (PF07837)
858215.Thexy_2324				(PF02732)	(plastid)
858215.Thexy_2302				(PF14021)
858215.Thexy_0792				(PF02915)
858215.Thexy_1028				(PF01409)
858215.Thexy_1943				(PF17147)
858215.Thexy_0949				(PF02371)
858215.Thexy_0194				(PF02915)
858215.Thexy_2267				(PF17147)
858215.Thexy_2260				(PF02371)
858215.Thexy_1586				(PF07085)
858215.Thexy_1589				(PF07085)
858215.Thexy_1617				(PF17147)
858215.Thexy_0984				(PF02915)
858215.Thexy_2275				(PF01930)
858215.Thexy_1770				(PF02371)
858215.Thexy_0226				(PF07085)
858215.Thexy_0645				(PF02371)
858215.Thexy_0756				(PF14021)
858215.Thexy_1748				(PF02915)
858215.Thexy_1901				(PF02915)
858215.Thexy_1029				(PF01409)
858215.Thexy_1135				(PF02371)
858215.Thexy_0241				(PF17147)
858215.Thexy_0388				(PF17147)
858215.Thexy_0891				(PF02371)
858215.Thexy_1428				(PF02371)
858215.Thexy_1631				(PF17147)
858215.Thexy_2351				(PF01930)
858215.Thexy_2298				(PF02371)
858215.Thexy_0134				(PF02371)
858215.Thexy_1948				(PF02915)
858215.Thexy_0581				(PF02371)
858215.Thexy_0631				(PF07085)
858215.Thexy_0128				(PF02371)
858215.Thexy_1261				(PF04423)
858215.Thexy_2315				PF00261
858215.Thexy_1853				(PF06777)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================