Effective results for Prevotella marshii DSM 16973 = JCM 13450 (eggnog40)

Summary

Number of putative secreted proteins: 48
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 48 proteins (3 high, 45 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
862515.HMPREF0658_1157PF12812ER
862515.HMPREF0658_0154(PF13306)ER
862515.HMPREF0658_0948(PF13306)ER
862515.HMPREF0658_1059(PF13306)ER
862515.HMPREF0658_1450(PF05704)(mitochondrial)
862515.HMPREF0658_1854(PF00328)ER
862515.HMPREF0658_0736(PF13306)ER
862515.HMPREF0658_0148(PF13306)ER
862515.HMPREF0658_0049(PF13306)ER
862515.HMPREF0658_0268(PF03051)ER
862515.HMPREF0658_1794(PF13306)ER
862515.HMPREF0658_2038(PF13306)ER
862515.HMPREF0658_1125(PF03432)(mitochondrial)
862515.HMPREF0658_0081(PF13306)ER
862515.HMPREF0658_0653(PF00328)ER
862515.HMPREF0658_1740(PF03051)ER
862515.HMPREF0658_0421(PF13306)ER
862515.HMPREF0658_1916(PF13306)ER
862515.HMPREF0658_1761(PF13306)(ER)
862515.HMPREF0658_2114(PF13306)ER
862515.HMPREF0658_0994(PF01715)(plastid)
862515.HMPREF0658_1705(PF05034) (PF07476)
862515.HMPREF0658_1360(PF02971) (PF07837)
862515.HMPREF0658_1871PF03128mitochondrial; not used
862515.HMPREF0658_1312(PF13155) (PF01807)
862515.HMPREF0658_0678(PF13155) (PF01807)
862515.HMPREF0658_0787(PF13155) (PF01807)
862515.HMPREF0658_1127(PF13155) (PF01807)
862515.HMPREF0658_0992(PF02689)
862515.HMPREF0658_0998(PF13306)
862515.HMPREF0658_0761(PF13155)
862515.HMPREF0658_1963(PF04991)
862515.HMPREF0658_0141(PF16314)
862515.HMPREF0658_0811(PF14771)
862515.HMPREF0658_1817(PF03051)
862515.HMPREF0658_0556(PF03432)
862515.HMPREF0658_1045(PF03630)
862515.HMPREF0658_0008(PF03432)
862515.HMPREF0658_0006(PF13155)
862515.HMPREF0658_0225(PF01715)
862515.HMPREF0658_1193(PF13155)
862515.HMPREF0658_1195(PF03432)
862515.HMPREF0658_2195PF16269
862515.HMPREF0658_1703(PF14330)
862515.HMPREF0658_1686(PF04991)
862515.HMPREF0658_1747(PF04991)
862515.HMPREF0658_1215(PF03432)
862515.HMPREF0658_2069(PF05693)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================