Effective results for Azospirillum lipoferum 4B (eggnog40)

Summary

Number of putative secreted proteins: 20
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 20 proteins (1 high, 19 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
862719.AZOLI_2911(PF13551) (PF13592)(plastid)
862719.AZOLI_0072(PF13551) (PF13592)(plastid)
862719.AZOLI_2791(PF13551) (PF13592)(plastid)
862719.AZOLI_1531(PF13551) (PF13592)(plastid)
862719.AZOLI_1534(PF07678)ER
862719.AZOLI_2078(PF13551) (PF13592)(mitochondrial)
862719.AZOLI_2499(PF13551) (PF13592)(mitochondrial)
862719.AZOLI_0713(PF13551) (PF13592)(plastid)
862719.AZOLI_0094(PF13551) (PF13592)(plastid)
862719.AZOLI_0280(PF09361)(plastid)
862719.AZOLI_1614(PF09361)
862719.AZOLI_1122(PF09361)
862719.AZOLI_1760(PF00622)
862719.AZOLI_0588(PF09361)
862719.AZOLI_0586(PF09361)
862719.AZOLI_1409(PF09361)
862719.AZOLI_0613PF13733
862719.AZOLI_1525(PF12513)
862719.AZOLI_0253(PF09731)
862719.AZOLI_2723(PF16095)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================